CHANGELOG.md
CITATION.cff
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/decryptamp/__init__.py
src/decryptamp/amp_predictor.py
src/decryptamp/colors.py
src/decryptamp/config.py
src/decryptamp/data_handler.py
src/decryptamp/deduplication.py
src/decryptamp/dependency_checker.py
src/decryptamp/main.py
src/decryptamp/manifest.py
src/decryptamp/orchestrator.py
src/decryptamp/output_layout.py
src/decryptamp/peptide_processor.py
src/decryptamp/report.py
src/decryptamp/ampidentifier/__init__.py
src/decryptamp/ampidentifier/core.py
src/decryptamp/ampidentifier/data_io.py
src/decryptamp/ampidentifier/feature_extraction.py
src/decryptamp/ampidentifier/reporting.py
src/decryptamp/ampidentifier/voting.py
src/decryptamp/ampidentifier/models/amp_model_gb_tuned.pkl
src/decryptamp/ampidentifier/models/amp_model_lgbm_tuned.pkl
src/decryptamp/ampidentifier/models/amp_model_rf_tuned.pkl
src/decryptamp/ampidentifier/models/amp_model_svm_tuned.pkl
src/decryptamp/ampidentifier/models/amp_model_voting_tuned.pkl
src/decryptamp/ampidentifier/models/amp_model_xgb_tuned.pkl
src/decryptamp/ampidentifier/models/scaler_robust.pkl
src/decryptamp/ampidentifier/models/scaler_std.pkl
src/decryptamp/ampidentifier/models/selected_features.txt
src/decryptamp/ampidentifier/models/threshold_gb.txt
src/decryptamp/ampidentifier/models/threshold_lgbm.txt
src/decryptamp/ampidentifier/models/threshold_rf.txt
src/decryptamp/ampidentifier/models/threshold_svm.txt
src/decryptamp/ampidentifier/models/threshold_voting.txt
src/decryptamp/ampidentifier/models/threshold_xgb.txt
src/decryptamp/example-data/bacteria.faa
tests/test_amp_predictor.py
tests/test_manifest.py
tests/test_peptide_processor.py