AGENT_GUIDE.md
CHANGELOG.md
CITATION.cff
CONCEPTS.md
CONTRIBUTING.md
INSTALL.md
LICENSE
MANIFEST.in
NOTICE
README.md
WORKFLOW.md
__init__.py
amplitudes.py
assembly.py
build_docs.py
build_knowledge.py
checkpointing.py
cli.py
cohesive_checkpoint.py
coordinates.py
dependencies.py
diagnostics.py
environment.yml
extensions.py
fields.py
forms.py
fracture.py
fracture_evidence.py
interfaces.py
io.py
loads.py
models.py
platforms.py
problems.py
procedures.py
project.py
provenance.py
py.typed
pyproject.toml
release_gate.py
solvers.py
spaces.py
step_providers.py
steps.py
studies.py
units.py
upgrades.py
validation.py
verification.py
./__init__.py
./amplitudes.py
./assembly.py
./build_docs.py
./build_knowledge.py
./checkpointing.py
./cli.py
./cohesive_checkpoint.py
./coordinates.py
./dependencies.py
./diagnostics.py
./extensions.py
./fields.py
./forms.py
./fracture.py
./fracture_evidence.py
./interfaces.py
./io.py
./loads.py
./models.py
./platforms.py
./problems.py
./procedures.py
./project.py
./provenance.py
./py.typed
./release_gate.py
./solvers.py
./spaces.py
./step_providers.py
./steps.py
./studies.py
./units.py
./upgrades.py
./validation.py
./verification.py
./backends/__init__.py
./backends/base.py
./backends/fenicsx.py
./backends/registry.py
./benchmarks/__init__.py
./benchmarks/dynamic_fracture.py
./benchmarks/golden.py
./benchmarks/registry.py
./boundary_models/__init__.py
./boundary_models/absorbing.py
./boundary_models/mechanical.py
./boundary_models/thermal.py
./campaigns/__init__.py
./campaigns/config.py
./campaigns/core.py
./campaigns/parameters.py
./constitutive/__init__.py
./constitutive/catalog.py
./constitutive/creep.py
./constitutive/elasticity.py
./constitutive/fatigue.py
./constitutive/hyperelasticity.py
./constitutive/plasticity.py
./constitutive/quadrature.py
./constitutive/user_material.py
./constraints/__init__.py
./constraints/affine.py
./constraints/boundary.py
./datasets/__init__.py
./datasets/core.py
./datasets/external.py
./datasets/observations.py
./datasets/schema.py
./datasets/torch.py
./elements/__init__.py
./ir/__init__.py
./ir/export.py
./ir/schema.py
./ir/values.py
./kernel/__init__.py
./kernel/constants.py
./kernel/dofs.py
./knowledge/README.md
./knowledge/__init__.py
./knowledge/catalog.json
./knowledge/benchmarks/__init__.py
./knowledge/benchmarks/arrhenius_global_creep.json
./knowledge/benchmarks/c3d10h_periodic_cell.json
./knowledge/benchmarks/cae_reliability_cliffs.json
./knowledge/benchmarks/campaign_surrogate_pipeline.json
./knowledge/benchmarks/classical_sub_rayleigh_crack_v3.json
./knowledge/benchmarks/creep_abaqus_constant_stress.json
./knowledge/benchmarks/creep_damage_material_paths.json
./knowledge/benchmarks/creep_hot_wall_release.json
./knowledge/benchmarks/distributed_cohesive_force.json
./knowledge/benchmarks/dynamic_fracture_energy_v2.json
./knowledge/benchmarks/elasticity_foundation.json
./knowledge/benchmarks/finite_strain_incremental_waves_v1.json
./knowledge/benchmarks/implicit_creep_relaxation.json
./knowledge/benchmarks/j2_abaqus_rate_independent.json
./knowledge/benchmarks/j2_global_restart.json
./knowledge/benchmarks/j2_multielement_patch.json
./knowledge/benchmarks/j2_nonuniform_bending.json
./knowledge/benchmarks/jmps_weak_interface_convergence_v4.json
./knowledge/benchmarks/jmps_weak_interface_transition_v4.json
./knowledge/benchmarks/linear_static_cantilever.json
./knowledge/benchmarks/mooney_rivlin_material_paths.json
./knowledge/benchmarks/neo_hookean_release.json
./knowledge/benchmarks/operator_contracts.json
./knowledge/benchmarks/plane_stress_thin_3d_crosscheck.json
./knowledge/benchmarks/thermoelastic_free_expansion.json
./knowledge/benchmarks/transient_heat_release.json
./knowledge/benchmarks/wave_release.json
./knowledge/cards/__init__.py
./knowledge/cards/abaqus_engineering_regions.json
./knowledge/cards/campaign_learning_pipeline.json
./knowledge/cards/cohesive_state_portability.json
./knowledge/cards/coordinate_reference_coupling.json
./knowledge/cards/creep_damage_assessment.json
./knowledge/cards/distributed_cohesive_force.json
./knowledge/cards/dynamic_fracture_v5_evidence.json
./knowledge/cards/finite_strain_plane_stress.json
./knowledge/cards/global_implicit_creep.json
./knowledge/cards/integration_point_recovery.json
./knowledge/cards/j2_global_plasticity.json
./knowledge/cards/mixed_hybrid_hyperelasticity.json
./knowledge/cards/mooney_rivlin_hyperelasticity.json
./knowledge/cards/observation_grid_learning.json
./knowledge/cards/operator_system_contracts.json
./knowledge/cards/result_field_sampling.json
./knowledge/cards/scientific_verification.json
./knowledge/cards/simplex_mesh_quality.json
./knowledge/cards/solution_procedures.json
./knowledge/cards/standard_result_projection.json
./knowledge/cards/surface_resultant_load.json
./knowledge/cards/thermoelastic_analysis.json
./knowledge/cards/transient_checkpoint_portability.json
./knowledge/decisions/0001-scientific-knowledge-as-code.md
./knowledge/decisions/0002-structured-execution-evidence.md
./knowledge/decisions/0003-scientific-trust-is-separate-from-execution.md
./knowledge/decisions/0004-one-public-step-semantics.md
./knowledge/decisions/0005-shared-transient-restart.md
./knowledge/decisions/0006-observation-contract-before-digital-twin.md
./knowledge/decisions/0007-lightweight-provenance-before-signatures.md
./knowledge/decisions/0008-mixed-field-visualization-backends.md
./knowledge/decisions/0009-sparse-cohesive-owner-exchange.md
./knowledge/decisions/__init__.py
./knowledge/external_data/__init__.py
./knowledge/external_data/science_supershear_dryad_v7.json
./knowledge/research_tasks/__init__.py
./knowledge/research_tasks/science_supershear_v5.json
./knowledge/schema/__init__.py
./knowledge/schema/benchmark_card.schema.json
./knowledge/schema/scientific_function_card.schema.json
./materials/__init__.py
./materials/library.py
./materials/properties.py
./materials/schemas.py
./materials/data/__init__.py
./materials/data/aluminum_generic.json
./materials/data/orthotropic_template.json
./materials/data/silicon_generic.json
./materials/data/silicon_nitride_generic.json
./materials/data/steel_generic.json
./mechanics/__init__.py
./mechanics/creep.py
./mechanics/plasticity.py
./mesh/__init__.py
./mesh/abaqus.py
./mesh/formats.py
./mesh/quality.py
./mesh/regions.py
./mesh/selectors.py
./operators/__init__.py
./operators/core.py
./operators/elasticity.py
./operators/system.py
./release/0.2.0a2.json
./results/__init__.py
./results/core.py
./results/execution.py
./results/field_catalog.py
./results/finite_strain.py
./results/output.py
./results/plan.py
./results/projection.py
./results/quantities.py
./results/recovery.py
./results/visualization.py
./surrogates/__init__.py
./surrogates/base.py
./surrogates/domain.py
./surrogates/linear.py
./surrogates/physics.py
./surrogates/pinn_torch.py
./surrogates/torch_adapter.py
./surrogates/training.py
./templates/__init__.py
./templates/static-solid/AGENTS.md
./templates/static-solid/README.md
./templates/static-solid/agentfem.toml
./templates/static-solid/case.py
./templates/steady-heat/AGENTS.md
./templates/steady-heat/README.md
./templates/steady-heat/agentfem.toml
./templates/steady-heat/case.py
./templates/structural-dynamics/AGENTS.md
./templates/structural-dynamics/README.md
./templates/structural-dynamics/agentfem.toml
./templates/structural-dynamics/case.py
./time/__init__.py
./time/explicit.py
./time/implicit.py
./time/runtime.py
agentfem.egg-info/PKG-INFO
agentfem.egg-info/SOURCES.txt
agentfem.egg-info/dependency_links.txt
agentfem.egg-info/entry_points.txt
agentfem.egg-info/requires.txt
agentfem.egg-info/top_level.txt
backends/__init__.py
backends/base.py
backends/fenicsx.py
backends/registry.py
benchmarks/README.md
benchmarks/__init__.py
benchmarks/dynamic_fracture.py
benchmarks/golden.py
benchmarks/registry.py
boundary_models/__init__.py
boundary_models/absorbing.py
boundary_models/mechanical.py
boundary_models/thermal.py
campaigns/__init__.py
campaigns/config.py
campaigns/core.py
campaigns/parameters.py
constitutive/__init__.py
constitutive/catalog.py
constitutive/creep.py
constitutive/elasticity.py
constitutive/fatigue.py
constitutive/hyperelasticity.py
constitutive/plasticity.py
constitutive/quadrature.py
constitutive/user_material.py
constraints/__init__.py
constraints/affine.py
constraints/boundary.py
datasets/__init__.py
datasets/core.py
datasets/external.py
datasets/observations.py
datasets/schema.py
datasets/torch.py
docs/abaqus_c3d10h_periodic_cell.md
docs/abaqus_user_material_bridge.md
docs/agent_gui_integration.md
docs/ai_native_learning.md
docs/air_architecture_roadmap.md
docs/api_style.md
docs/architecture_review.md
docs/development_testing.md
docs/digital_twin_direction.md
docs/documentation_site.md
docs/dynamic_cohesive_fracture_architecture.md
docs/engineering_feedback_2026_08_05.md
docs/engineering_workflows.md
docs/extension_rules.md
docs/extensions_and_private_products.md
docs/fem_foundation_audit_2026_08_05.md
docs/getting_started.md
docs/index.md
docs/licensing.md
docs/mesh_interoperability.md
docs/module_map.md
docs/nonlinear_materials.md
docs/nonlinear_solid_architecture.md
docs/operator_contracts.md
docs/platform_support.md
docs/product_roadmap.md
docs/project_upgrades.md
docs/provenance_seal.md
docs/publishing.md
docs/release_0.2.0a1.md
docs/release_0.2.0a2.md
docs/release_2026_08_26.md
docs/release_audit_2026_08_05.md
docs/result_field_semantics.md
docs/results_and_campaigns.md
docs/scientific_verification.md
docs/solution_procedures_and_thermal_creep.md
docs/step_and_output_architecture.md
docs/tutorial_design.md
docs/validation.md
docs/agents/index.md
docs/agents/skill.md
docs/examples/index.md
docs/extend/index.md
docs/get_started/index.md
docs/guide/creep_and_inelasticity.md
docs/guide/dynamics.md
docs/guide/heat_transfer.md
docs/guide/index.md
docs/guide/model_setup.md
docs/guide/results.md
docs/guide/simulation_to_learning.md
docs/guide/solid_mechanics.md
docs/project/engineering_notes.md
docs/project/index.md
docs/project/versioning.md
docs/reference/api.md
docs/reference/index.md
docs/reference/scientific_function_reference.md
docs/reference/theory_and_conventions.md
docs/research/science_supershear_v5.md
docs/trust/index.md
elements/README.md
elements/__init__.py
examples/README.md
examples/campaign_from_json.py
examples/campaign_from_json.spec.json
examples/creep_hot_wall_assessment.py
examples/implicit_creep_relaxation_3d.py
examples/j2_plasticity_3d.py
examples/material_models.py
examples/science_supershear_v5_protocol.py
examples/static_elasticity_2d.py
examples/static_elasticity_surrogate_campaign.py
examples/thermal_stress_wall_2d.py
examples/transient_heat_2d.py
examples/wave_packet_inclusion_2d.py
examples/wave_packet_plate_2d.py
examples/abaqus_c3d10h_periodic_cell/README.md
examples/abaqus_c3d10h_periodic_cell/case.py
examples/abaqus_c3d10h_periodic_cell/postprocess.py
examples/abaqus_c3d10h_periodic_cell/abaqus_reference/model.inp
examples/abaqus_c3d10h_periodic_cell/abaqus_reference/postprocess_odb.py
examples/abaqus_c3d10h_periodic_cell/input/periodic_cell_c3d10h.dat
examples/abaqus_c3d10h_periodic_cell/input/periodic_cell_equations.mpc
ir/__init__.py
ir/export.py
ir/schema.py
ir/values.py
kernel/__init__.py
kernel/constants.py
kernel/dofs.py
knowledge/README.md
knowledge/__init__.py
knowledge/catalog.json
knowledge/benchmarks/__init__.py
knowledge/benchmarks/arrhenius_global_creep.json
knowledge/benchmarks/c3d10h_periodic_cell.json
knowledge/benchmarks/cae_reliability_cliffs.json
knowledge/benchmarks/campaign_surrogate_pipeline.json
knowledge/benchmarks/classical_sub_rayleigh_crack_v3.json
knowledge/benchmarks/creep_abaqus_constant_stress.json
knowledge/benchmarks/creep_damage_material_paths.json
knowledge/benchmarks/creep_hot_wall_release.json
knowledge/benchmarks/distributed_cohesive_force.json
knowledge/benchmarks/dynamic_fracture_energy_v2.json
knowledge/benchmarks/elasticity_foundation.json
knowledge/benchmarks/finite_strain_incremental_waves_v1.json
knowledge/benchmarks/implicit_creep_relaxation.json
knowledge/benchmarks/j2_abaqus_rate_independent.json
knowledge/benchmarks/j2_global_restart.json
knowledge/benchmarks/j2_multielement_patch.json
knowledge/benchmarks/j2_nonuniform_bending.json
knowledge/benchmarks/jmps_weak_interface_convergence_v4.json
knowledge/benchmarks/jmps_weak_interface_transition_v4.json
knowledge/benchmarks/linear_static_cantilever.json
knowledge/benchmarks/mooney_rivlin_material_paths.json
knowledge/benchmarks/neo_hookean_release.json
knowledge/benchmarks/operator_contracts.json
knowledge/benchmarks/plane_stress_thin_3d_crosscheck.json
knowledge/benchmarks/thermoelastic_free_expansion.json
knowledge/benchmarks/transient_heat_release.json
knowledge/benchmarks/wave_release.json
knowledge/cards/__init__.py
knowledge/cards/abaqus_engineering_regions.json
knowledge/cards/campaign_learning_pipeline.json
knowledge/cards/cohesive_state_portability.json
knowledge/cards/coordinate_reference_coupling.json
knowledge/cards/creep_damage_assessment.json
knowledge/cards/distributed_cohesive_force.json
knowledge/cards/dynamic_fracture_v5_evidence.json
knowledge/cards/finite_strain_plane_stress.json
knowledge/cards/global_implicit_creep.json
knowledge/cards/integration_point_recovery.json
knowledge/cards/j2_global_plasticity.json
knowledge/cards/mixed_hybrid_hyperelasticity.json
knowledge/cards/mooney_rivlin_hyperelasticity.json
knowledge/cards/observation_grid_learning.json
knowledge/cards/operator_system_contracts.json
knowledge/cards/result_field_sampling.json
knowledge/cards/scientific_verification.json
knowledge/cards/simplex_mesh_quality.json
knowledge/cards/solution_procedures.json
knowledge/cards/standard_result_projection.json
knowledge/cards/surface_resultant_load.json
knowledge/cards/thermoelastic_analysis.json
knowledge/cards/transient_checkpoint_portability.json
knowledge/decisions/0001-scientific-knowledge-as-code.md
knowledge/decisions/0002-structured-execution-evidence.md
knowledge/decisions/0003-scientific-trust-is-separate-from-execution.md
knowledge/decisions/0004-one-public-step-semantics.md
knowledge/decisions/0005-shared-transient-restart.md
knowledge/decisions/0006-observation-contract-before-digital-twin.md
knowledge/decisions/0007-lightweight-provenance-before-signatures.md
knowledge/decisions/0008-mixed-field-visualization-backends.md
knowledge/decisions/0009-sparse-cohesive-owner-exchange.md
knowledge/decisions/__init__.py
knowledge/external_data/__init__.py
knowledge/external_data/science_supershear_dryad_v7.json
knowledge/research_tasks/__init__.py
knowledge/research_tasks/science_supershear_v5.json
knowledge/schema/__init__.py
knowledge/schema/benchmark_card.schema.json
knowledge/schema/scientific_function_card.schema.json
logo/AgentFEM_logo.png
logo/AgentFEM_logo_transparent.png
logo/README.md
materials/__init__.py
materials/library.py
materials/properties.py
materials/schemas.py
materials/data/__init__.py
materials/data/aluminum_generic.json
materials/data/orthotropic_template.json
materials/data/silicon_generic.json
materials/data/silicon_nitride_generic.json
materials/data/steel_generic.json
mechanics/__init__.py
mechanics/creep.py
mechanics/plasticity.py
mesh/__init__.py
mesh/abaqus.py
mesh/formats.py
mesh/quality.py
mesh/regions.py
mesh/selectors.py
operators/README.md
operators/__init__.py
operators/core.py
operators/elasticity.py
operators/system.py
release/0.2.0a2.json
results/__init__.py
results/core.py
results/execution.py
results/field_catalog.py
results/finite_strain.py
results/output.py
results/plan.py
results/projection.py
results/quantities.py
results/recovery.py
results/visualization.py
skills/agentfem/SKILL.md
skills/agentfem/references/concepts.md
skills/agentfem/references/extension_rules.md
skills/agentfem/references/module_map.md
skills/agentfem/references/validation.md
skills/agentfem/references/workflow.md
surrogates/__init__.py
surrogates/base.py
surrogates/domain.py
surrogates/linear.py
surrogates/physics.py
surrogates/pinn_torch.py
surrogates/torch_adapter.py
surrogates/training.py
templates/__init__.py
templates/static-solid/AGENTS.md
templates/static-solid/README.md
templates/static-solid/agentfem.toml
templates/static-solid/case.py
templates/steady-heat/AGENTS.md
templates/steady-heat/README.md
templates/steady-heat/agentfem.toml
templates/steady-heat/case.py
templates/structural-dynamics/AGENTS.md
templates/structural-dynamics/README.md
templates/structural-dynamics/agentfem.toml
templates/structural-dynamics/case.py
tests/portable_checkpoint_driver.py
tests/portable_cohesive_checkpoint_driver.py
tests/portable_cohesive_dynamics_driver.py
tests/test_abaqus_interop.py
tests/test_backends.py
tests/test_campaigns.py
tests/test_common_workflows.py
tests/test_constitutive_models.py
tests/test_coordinates.py
tests/test_datasets.py
tests/test_documentation.py
tests/test_dynamic_fracture.py
tests/test_dynamic_fracture_benchmarks.py
tests/test_engineering_workflows.py
tests/test_extensions.py
tests/test_external_datasets.py
tests/test_fracture_v5.py
tests/test_global_cohesive_residual.py
tests/test_interfaces.py
tests/test_ir.py
tests/test_mesh_formats.py
tests/test_mesh_quality.py
tests/test_operators.py
tests/test_p1_platform.py
tests/test_packaging.py
tests/test_parallel_affine.py
tests/test_parallel_cli.py
tests/test_parallel_cohesive.py
tests/test_parallel_mesh_semantics.py
tests/test_parallel_mixed.py
tests/test_parallel_results.py
tests/test_parallel_transient.py
tests/test_platforms.py
tests/test_project_cli.py
tests/test_provenance.py
tests/test_release_goldens.py
tests/test_results.py
tests/test_solvers.py
tests/test_surrogates.py
tests/test_transient_restart.py
tests/test_units.py
tests/test_user_material.py
tests/test_validation.py
tests/test_verification.py
time/__init__.py
time/explicit.py
time/implicit.py
time/runtime.py