biopython>=1.85
pandas>=2.3.1
tqdm>=4.67.1
seaborn>=0.13.2
matplotlib>=3.8.0
plotly>=6.2.0
logomaker>=0.8
networkx>=3.3
scikit-learn>=1.3
upsetplot

[dev]
ruff
pytest
jupytext
pre-commit

[docs]
sphinx
sphinx-book-theme
myst-nb
ipywidgets
sphinx-new-tab-link!=0.2.2
jupytext
sphinx-copybutton

[lint]
mypy
ruff
codespell
