AGENTS.md
CLAUDE.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/monai_physio/__init__.py
src/monai_physio/anatomy_taxonomy.py
src/monai_physio/convert_image_4d_to_3d.py
src/monai_physio/convert_vtk_to_usd.py
src/monai_physio/download_data.py
src/monai_physio/evaluate_movement_base.py
src/monai_physio/evaluate_movement_duke_heart.py
src/monai_physio/evaluate_movement_lung.py
src/monai_physio/infer_physicsnemo_base.py
src/monai_physio/infer_physicsnemo_mgn.py
src/monai_physio/infer_physicsnemo_mlp.py
src/monai_physio/monai_physio_base.py
src/monai_physio/process_contours.py
src/monai_physio/process_images.py
src/monai_physio/process_labelmaps.py
src/monai_physio/process_landmarks.py
src/monai_physio/process_physicsnemo.py
src/monai_physio/process_tests.py
src/monai_physio/process_transforms.py
src/monai_physio/process_usd.py
src/monai_physio/process_usd_anatomy.py
src/monai_physio/register_images_ants.py
src/monai_physio/register_images_base.py
src/monai_physio/register_images_chain.py
src/monai_physio/register_images_greedy.py
src/monai_physio/register_images_greedy_icon.py
src/monai_physio/register_images_icon.py
src/monai_physio/register_models_distance_maps.py
src/monai_physio/register_models_icp.py
src/monai_physio/register_models_icp_itk.py
src/monai_physio/register_models_pca.py
src/monai_physio/register_time_series_images.py
src/monai_physio/report_evaluate_movement.py
src/monai_physio/segment_anatomy_base.py
src/monai_physio/segment_chest_total_segmentator.py
src/monai_physio/segment_chest_total_segmentator_with_contrast.py
src/monai_physio/segment_heart_simpleware.py
src/monai_physio/segment_heart_simpleware_trimmed_branches.py
src/monai_physio/segment_nv_segment_ct_mri.py
src/monai_physio/train_physicsnemo_base.py
src/monai_physio/train_physicsnemo_mgn.py
src/monai_physio/train_physicsnemo_mlp.py
src/monai_physio/train_physicsnemo_physics_informed_motion.py
src/monai_physio/workflow_convert_image_to_usd.py
src/monai_physio/workflow_convert_image_to_vtk.py
src/monai_physio/workflow_convert_vtk_to_usd.py
src/monai_physio/workflow_create_mean_surface.py
src/monai_physio/workflow_create_statistical_model.py
src/monai_physio/workflow_evaluate_movement.py
src/monai_physio/workflow_finetune_icon_registration.py
src/monai_physio/workflow_fit_statistical_model_to_patient.py
src/monai_physio/workflow_infer_movement.py
src/monai_physio/workflow_infer_physicsnemo.py
src/monai_physio/workflow_reconstruct_highres_4d_ct.py
src/monai_physio/workflow_train_physicsnemo.py
src/monai_physio.egg-info/PKG-INFO
src/monai_physio.egg-info/SOURCES.txt
src/monai_physio.egg-info/dependency_links.txt
src/monai_physio.egg-info/entry_points.txt
src/monai_physio.egg-info/requires.txt
src/monai_physio.egg-info/top_level.txt
src/monai_physio/cli/__init__.py
src/monai_physio/cli/_method_factories.py
src/monai_physio/cli/convert_image_4d_to_3d.py
src/monai_physio/cli/convert_image_to_usd.py
src/monai_physio/cli/convert_image_to_vtk.py
src/monai_physio/cli/convert_vtk_to_usd.py
src/monai_physio/cli/create_statistical_model.py
src/monai_physio/cli/download_data.py
src/monai_physio/cli/fit_statistical_model_to_patient.py
src/monai_physio/cli/infer_physicsnemo.py
src/monai_physio/cli/reconstruct_highres_4d_ct.py
src/monai_physio/cli/train_physicsnemo.py
src/monai_physio/cli/visualize_pca_modes.py
src/monai_physio/simpleware_medical/SimplewareScript_heart_segmentation.py
src/monai_physio/simpleware_medical/__init__.py
src/monai_physio/vtk_to_usd/__init__.py
src/monai_physio/vtk_to_usd/converter.py
src/monai_physio/vtk_to_usd/data_structures.py
src/monai_physio/vtk_to_usd/material_manager.py
src/monai_physio/vtk_to_usd/mesh_utils.py
src/monai_physio/vtk_to_usd/primvar_derivations.py
src/monai_physio/vtk_to_usd/usd_mesh_converter.py
src/monai_physio/vtk_to_usd/usd_utils.py
src/monai_physio/vtk_to_usd/vtk_reader.py