.cookiecutter.yaml
.editorconfig
.gitignore
.pre-commit-config.yaml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
Justfile
LICENSE
README.md
environment.yml
pyproject.toml
setup.py
.github/PULL_REQUEST_TEMPLATE.md
.github/dependabot.yml
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/maintenance_task.md
.github/workflows/ci.yml
.github/workflows/create-issue.yml
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/installation.rst
examples/README.md
examples/actin-parameters.md
examples/actin/actin_job_definition.json
examples/actin/actin_notes.md
examples/actin/actin_parameters.md
examples/actin/template.xlsx
examples/actin/docker/Dockerfile
examples/actin/docker/actin.sh
examples/actin/docker/env.yml
examples/actin/docker/src/actin.py
examples/kinesin/kinesin_job_definition.json
examples/kinesin/template.xlsx
examples/kinesin/docker/Dockerfile
examples/kinesin/docker/env.yml
examples/kinesin/docker/kinesin.sh
examples/kinesin/docker/src/kinesin.py
examples/microtubules/microtubules_job_definition.json
examples/microtubules/template.xlsx
examples/microtubules/visualize_microtubules.py
examples/microtubules/docker/Dockerfile
examples/microtubules/docker/env.yml
examples/microtubules/docker/microtubules.sh
examples/microtubules/docker/src/microtubules.py
examples/post_processing/post_processing_job_definition.json
examples/post_processing/template.xlsx
examples/post_processing/docker/Dockerfile
examples/post_processing/docker/env.yml
examples/post_processing/docker/post_processing.sh
examples/post_processing/docker/src/post_processing.py
examples/post_processing/docker/src/test.py
simularium_readdy_models/__init__.py
simularium_readdy_models.egg-info/PKG-INFO
simularium_readdy_models.egg-info/SOURCES.txt
simularium_readdy_models.egg-info/dependency_links.txt
simularium_readdy_models.egg-info/entry_points.txt
simularium_readdy_models.egg-info/not-zip-safe
simularium_readdy_models.egg-info/requires.txt
simularium_readdy_models.egg-info/top_level.txt
simularium_readdy_models/actin/__init__.py
simularium_readdy_models/actin/actin_analyzer.py
simularium_readdy_models/actin/actin_generator.py
simularium_readdy_models/actin/actin_reactions.py
simularium_readdy_models/actin/actin_simulation.py
simularium_readdy_models/actin/actin_structure.py
simularium_readdy_models/actin/actin_test_data.py
simularium_readdy_models/actin/actin_util.py
simularium_readdy_models/actin/arp_data.py
simularium_readdy_models/actin/fiber_data.py
simularium_readdy_models/common/__init__.py
simularium_readdy_models/common/membrane_util.py
simularium_readdy_models/common/particle_data.py
simularium_readdy_models/common/readdy_util.py
simularium_readdy_models/common/repeated_timer.py
simularium_readdy_models/kinesin/__init__.py
simularium_readdy_models/kinesin/kinesin_simulation.py
simularium_readdy_models/kinesin/kinesin_util.py
simularium_readdy_models/microtubules/__init__.py
simularium_readdy_models/microtubules/microtubules_analyzer.py
simularium_readdy_models/microtubules/microtubules_reactions.py
simularium_readdy_models/microtubules/microtubules_simulation.py
simularium_readdy_models/microtubules/microtubules_util.py
simularium_readdy_models/tests/__init__.py
simularium_readdy_models/tests/conftest.py
simularium_readdy_models/tests/actin/test_actin_generator.py
simularium_readdy_models/visualization/__init__.py
simularium_readdy_models/visualization/actin_visualization.py
simularium_readdy_models/visualization/kinesin_visualization.py
simularium_readdy_models/visualization/microtubules_visualization.py