LICENSE.md
README.md
pyproject.toml
winnow/__init__.py
winnow/data_types.py
winnow/calibration/__init__.py
winnow/calibration/calibration_features.py
winnow/calibration/calibrator.py
winnow/calibration/diagnostics.py
winnow/calibration/features/__init__.py
winnow/calibration/features/base.py
winnow/calibration/features/beam.py
winnow/calibration/features/chimeric.py
winnow/calibration/features/constants.py
winnow/calibration/features/fragment_match.py
winnow/calibration/features/mass_error.py
winnow/calibration/features/retention_time.py
winnow/calibration/features/sequence.py
winnow/calibration/features/token_score.py
winnow/calibration/features/utils.py
winnow/compat/__init__.py
winnow/compat/instanovo.py
winnow/configs/annotate_proteome_hits.yaml
winnow/configs/calibrator.yaml
winnow/configs/compute_features.yaml
winnow/configs/diagnose_calibration.yaml
winnow/configs/koina.yaml
winnow/configs/predict.yaml
winnow/configs/residues.yaml
winnow/configs/train.yaml
winnow/configs/data_loader/instanovo.yaml
winnow/configs/data_loader/mztab.yaml
winnow/configs/data_loader/pointnovo.yaml
winnow/configs/data_loader/primenovo.yaml
winnow/configs/data_loader/winnow.yaml
winnow/configs/fdr_method/database_grounded.yaml
winnow/configs/fdr_method/nonparametric.yaml
winnow/datasets/__init__.py
winnow/datasets/calibration_dataset.py
winnow/datasets/feature_dataset.py
winnow/datasets/interfaces.py
winnow/datasets/psm_dataset.py
winnow/datasets/data_loaders/__init__.py
winnow/datasets/data_loaders/instanovo.py
winnow/datasets/data_loaders/mztab.py
winnow/datasets/data_loaders/pointnovo.py
winnow/datasets/data_loaders/primenovo.py
winnow/datasets/data_loaders/utils.py
winnow/datasets/data_loaders/winnow.py
winnow/fdr/__init__.py
winnow/fdr/base.py
winnow/fdr/database_grounded.py
winnow/fdr/nonparametric.py
winnow/scripts/__init__.py
winnow/scripts/main.py
winnow/utils/__init__.py
winnow/utils/config_formatter.py
winnow/utils/config_path.py
winnow/utils/hydra_overrides.py
winnow/utils/irt_calibration_config.py
winnow/utils/koina_intensity_config.py
winnow/utils/paths.py
winnow/utils/peptide.py
winnow/utils/proteome.py
winnow/utils/rich_console.py
winnow_fdr.egg-info/PKG-INFO
winnow_fdr.egg-info/SOURCES.txt
winnow_fdr.egg-info/dependency_links.txt
winnow_fdr.egg-info/entry_points.txt
winnow_fdr.egg-info/requires.txt
winnow_fdr.egg-info/top_level.txt