LICENSE.md,sha256=g-ugNA9Aq4lLzjwwT6peZBgMFHidkqKGyMa4QmQpPvQ,1094
README.md,sha256=Lf3ffwERj6VUe1ISPLrYZDYDsJhW_WwcKUqeROPcDqk,11533
bio_embeddings_duongttr/__init__.py,sha256=cQffA0gfqXgJcUEi9onSDagJDRduGBTB6qf8YaZyfNs,495
bio_embeddings_duongttr/align/__init__.py,sha256=A-89RWNKM-K3GGIpcKTvDIfZPkSJgPXTtr2_PB8ikdo,497
bio_embeddings_duongttr/align/deepblast.py,sha256=YU_hslGpuNe818Tmb1s15BWLOHDutL_20VKY22TbOrM,1994
bio_embeddings_duongttr/align/mmseqs2.py,sha256=5-p82AS31iXDgJKm8Tzaac042atUVPBwhNDLQNgg1_M,5834
bio_embeddings_duongttr/align/pipeline.py,sha256=onf3iymYQfSvRIQwQXANhbqbEWQL2PQ9-Fi-WP5UuJ8,13476
bio_embeddings_duongttr/bio_embeddings_schema.json,sha256=eWgkXQuEFQKoP4hFT8j1mT9LKx1baW8v5xw8Kj5vG3s,11845
bio_embeddings_duongttr/embed/__init__.py,sha256=2HtZYftpaJan8jNlW8hps90q6iOjmmq07iQrbHttB2w,8863
bio_embeddings_duongttr/embed/bepler_embedder.py,sha256=HkbKapfPp8aX48jj_3MmcNOgWtkczt1_E2rwRUt5yI0,5056
bio_embeddings_duongttr/embed/cpcprot_embedder.py,sha256=-q-A4usfOYB5nnMhZS5NxwXU3nOLW9zVLXN5jabFXkA,2542
bio_embeddings_duongttr/embed/embedder_interfaces.py,sha256=NJb8x8spH5RZ1qug64e1JbAUOZm6cI1xKQ-C0BsSSUA,7558
bio_embeddings_duongttr/embed/esm_embedder.py,sha256=zoWk7ek1p6rkUjEYKwe-P3NuKLI4vOefb6W6IRrzO_Y,5366
bio_embeddings_duongttr/embed/fasttext_embedder.py,sha256=32CHkMVUYUFhxgcZcLzV_0oLmRiFOQUqWvOe4NPZ0D8,2201
bio_embeddings_duongttr/embed/glove_embedder.py,sha256=3m1d1WqIhwvmV5tutr04t0OEYx8UgYhrExPxJ5miCjY,2194
bio_embeddings_duongttr/embed/one_hot_encoding_embedder.py,sha256=aZPCjM-4b6FElEstf-cJeNJn8w9Ht_fG0HNyuIQ53ks,1129
bio_embeddings_duongttr/embed/pipeline.py,sha256=Xw3bLUg2mMAuZkw9Yte2OABZRxukIVrFmfWyyDnPR_w,15067
bio_embeddings_duongttr/embed/plus_rnn_embedder.py,sha256=Jk89hZETVF1ZmG3GuDEN7uoKCkHB6SBh-4zH1cA4Tr0,3295
bio_embeddings_duongttr/embed/prottrans_albert_bfd_embedder.py,sha256=Xa3iENdYzVO6120lSRoxgomIgqNipgZKPFgEjzSksgs,1801
bio_embeddings_duongttr/embed/prottrans_base_embedder.py,sha256=BoOiG9hDMbfnG3hGP7rXZCC8ThytPM0zcL39xn96bmg,2460
bio_embeddings_duongttr/embed/prottrans_bert_bfd_embedder.py,sha256=5Avedu0P6CFMP6QNR7gwFia04IYo-ybx_0jBEycADls,1802
bio_embeddings_duongttr/embed/prottrans_t5_embedder.py,sha256=PdI4MT6tZlVMoRASfODkRAI_CzfUKo8-HExJtd3syN0,8048
bio_embeddings_duongttr/embed/prottrans_xlnet_uniref100_embedder.py,sha256=zWEwCu73I7fbzy0ozeuxkUuMrlcDzUIDq6Tt6Eqq-Hc,3528
bio_embeddings_duongttr/embed/seqvec_embedder.py,sha256=cyLAQbaFVzc-nWaHpT_MUFaiwJZuDYmDrnJy7nO_lYU,4134
bio_embeddings_duongttr/embed/unirep_embedder.py,sha256=3mh7ltYPo6LISp-zhinW8o8awl8s0mMIEtY7vBGXlcc,2750
bio_embeddings_duongttr/embed/word2vec_embedder.py,sha256=opP00ht2vFyXrsoFGcqGN_gNBx_aEYauWkD7LlUlRg4,2188
bio_embeddings_duongttr/extract/__init__.py,sha256=D4u_a23fWwj0Fg5zXii2FIvJri2f1MnFK1u3qCBLAIY,568
bio_embeddings_duongttr/extract/annotations/__init__.py,sha256=_N1LozRprcRH-xSVsKgREsCTOugP89RLiXiA3T1y8ho,735
bio_embeddings_duongttr/extract/annotations/binding_residues.py,sha256=gk-YVF1_Mq3HbW3PRWBVetJdoFBhLrlr9oTYurs2rk4,620
bio_embeddings_duongttr/extract/annotations/conservation.py,sha256=7QT7Qa_hC5KwDizTxhJ9BklqhdHxsthAo-gbepuQo3U,1036
bio_embeddings_duongttr/extract/annotations/disorder.py,sha256=EXq6jT1I57xR0kiClxJGCiAm8B0321Xu0MeBJUou2fY,333
bio_embeddings_duongttr/extract/annotations/location.py,sha256=KPmZGcZik8oFtOmJfj9wc1IrgvcHyKSLx_wq5OQ5wzM,1071
bio_embeddings_duongttr/extract/annotations/membrane.py,sha256=OdgrD_aC9VnQ26WISDIXdP9Nq9rDy5XfdJh-T1wJT-w,365
bio_embeddings_duongttr/extract/annotations/membrane_residues.py,sha256=_BK7I0fiu4tqCxmr_Rz9Pmsl4eAMVbD2r2Uq1Z8pEGA,931
bio_embeddings_duongttr/extract/annotations/secondary_structure.py,sha256=fDHyoJKn0rwAPDJl1brrwigsC5ClbFztqbqi4VqMrgM,855
bio_embeddings_duongttr/extract/basic/__init__.py,sha256=zHuVDfp1GvQoYcSyIJczv8NyMMJE19mgcTQsYdBNpF8,394
bio_embeddings_duongttr/extract/basic/annotation_inference_models.py,sha256=tG9gcZi21-33g4CUdKoZa4NQcxxYupQP0RsAdwSu0MA,2140
bio_embeddings_duongttr/extract/basic/basic_annotation_extractor.py,sha256=b6q-K3tcIbEHNq2cWGjXui_omDAeDBKZ_E_aYHwcK2c,9211
bio_embeddings_duongttr/extract/bindEmbed21/__init__.py,sha256=2YaipbdzxcEZ6yUpwGYIrW45lAwj5SRZY7st5UF1dNM,353
bio_embeddings_duongttr/extract/bindEmbed21/bindEmbed21DL_annotation_extractor.py,sha256=ajBWOKQOsQQmUgJf-jGMh2X7DxeWcZwPXLI5d5lH1KU,5808
bio_embeddings_duongttr/extract/bindEmbed21/bindEmbed21HBI_annotation_extractor.py,sha256=J8Qha__1tXct9wgxRt9nBNftfHELRHndtUz_GU4sRO0,4755
bio_embeddings_duongttr/extract/bindEmbed21/binding_residues_cnn.py,sha256=iEWSyB7k2n7vaKCjqUMqL66PWmmsJ_9NZkUjcd44h2w,1549
bio_embeddings_duongttr/extract/light_attention/__init__.py,sha256=EJaRvM8WeREyTr7f1BAynGLuStuAZXY6VHGChX-Sg0E,304
bio_embeddings_duongttr/extract/light_attention/light_attention_annotation_extractor.py,sha256=tJOkq8b1neQo3szH4zs-51dzwCYIX5Zj6lsbZLgUvPw,4090
bio_embeddings_duongttr/extract/light_attention/light_attention_model.py,sha256=Ue-9V72own8PFhntYOU27bS3rTb1gZR3tvMRvz-MmaA,2123
bio_embeddings_duongttr/extract/pipeline.py,sha256=XO8FcJ4VYD5f6KEzqiNz_o_VsMuVMcv98VZhvpA6LDs,39805
bio_embeddings_duongttr/extract/prott5cons/__init__.py,sha256=PPm_YT-OzQydrJv7KqVu1Et755LdIUokw6klaGG31wQ,213
bio_embeddings_duongttr/extract/prott5cons/conservation_cnn.py,sha256=supdHqtadghfak8P79gYARZSTiWoV-nFY-4oafEV0aM,1240
bio_embeddings_duongttr/extract/prott5cons/prot_t5_cons_annotation_extractor.py,sha256=1MhPu6Pan9JaFzbZoG0FHezOuYzrnp2pe_fGdG8d3pg,3558
bio_embeddings_duongttr/extract/tmbed/__init__.py,sha256=2ffiUPdxA_loe_wU7wX-ovMnMrnSbFtCbyGzcaHb1GI,151
bio_embeddings_duongttr/extract/tmbed/tmbed_annotation_extractor.py,sha256=qH_CtB9T6EYtpl17tQaZnIGiLEG5JVrCbLazugCGsYw,3734
bio_embeddings_duongttr/extract/tmbed/tmbed_cnn.py,sha256=0RiXIAGOIdMxgxEhFMbvjMnl9Stk6tvDCvTuCP0CZeE,3945
bio_embeddings_duongttr/extract/tmbed/tmbed_viterbi.py,sha256=oku3du-oSdUTuvPH-n9GyQi4WNsW4Gh9NUJLkaN-aE8,4250
bio_embeddings_duongttr/extract/unsupervised_utilities.py,sha256=ifZKYY5tMQ06U4rI7YGPUk_SvKF1PMZwxXrGChhLXZQ,3363
bio_embeddings_duongttr/mutagenesis/__init__.py,sha256=_8LgcEdSwOh9euXb9UZ0xZ6uvgPaUWR7rXt12bU2wc8,566
bio_embeddings_duongttr/mutagenesis/constants.py,sha256=LDiOwL8RW5VQra-2RKFuNwcfo5bdxLxJqU8m3jJmK8c,159
bio_embeddings_duongttr/mutagenesis/pipeline.py,sha256=Tm2LTCz55jdw2Afs3rRXvTKt4xST7XCIPzCNwd6JpF8,4351
bio_embeddings_duongttr/mutagenesis/protbert_bfd.py,sha256=Dc6g-gAajdxNULIYzKKwkOA8dV7X3SwmZP04RIhpNME,5589
bio_embeddings_duongttr/project/__init__.py,sha256=129EAQXi1x-Nb9rd3wmvK3yJEhpl8EKTWZjDt6OrI6Y,399
bio_embeddings_duongttr/project/pb_tucker.py,sha256=VI3lAtBY0Ym0upP8oyOW3Uh41ZZpgjKT-KoZcNnsNbs,1723
bio_embeddings_duongttr/project/pipeline.py,sha256=8CCsrx2e_tdDPC6x2jZOaIQb1QNd-d3sbfwxv8YBFEo,7024
bio_embeddings_duongttr/project/tsne.py,sha256=ujaZkPcvJd-pf-bgvskjlq3F_kM6TJXrthTA_wha9QY,712
bio_embeddings_duongttr/project/umap.py,sha256=TFty5akvB6eDusyM5L1Peqd2EYnox0ulfaBik2SBEis,690
bio_embeddings_duongttr/utilities/__init__.py,sha256=JG6tQN19AyTRdbSpKxSxXTc6nk9wg3NTm2gfeu-WCDE,893
bio_embeddings_duongttr/utilities/backports.py,sha256=zVpDkqn36HjwHRmUbfMDXO5SJjEYHZK0s-b133oToFU,667
bio_embeddings_duongttr/utilities/bisect_embedder_ram.py,sha256=IvIaHlBItPqd4JaGaRrk7SpFx2hoZf2libBnHXalVwY,2907
bio_embeddings_duongttr/utilities/cli.py,sha256=xo4X9AqM86k8tMkYIVRzPu770RAZ8R_TdfFxzG-IW0E,1013
bio_embeddings_duongttr/utilities/config.py,sha256=R2o1ca4Ua5oL0JQ-uTAZor01ZWgJIrUImz0WA5Y2Xfo,2369
bio_embeddings_duongttr/utilities/defaults.yml,sha256=mN77PxAx691yCk3_lxYcGZPg41Gw_b0rIVUBKOoKaRE,6141
bio_embeddings_duongttr/utilities/exceptions.py,sha256=oFLOtZ1CgMKQpn0MgJapnVBSaANckP2QkrUM20wwC_U,1202
bio_embeddings_duongttr/utilities/filemanagers/FileManagerInterface.py,sha256=l1M3BXV8ZOpLcOdBDLkwMMKA_Jvz5dY2sYsdupXwD20,875
bio_embeddings_duongttr/utilities/filemanagers/FileSystemFileManager.py,sha256=b009XcbKg4bIbWKXdI3ciGDx8j5HgFjJ7_E8wZvWoWo,2743
bio_embeddings_duongttr/utilities/filemanagers/__init__.py,sha256=JOSGgUltamUO-wtCdXAiamjwHs08M26dRANmkJFmOok,447
bio_embeddings_duongttr/utilities/helpers.py,sha256=9IK_o3ohs8asxywifilSbQSvu-CTuqBsG6HNYQmTz8Y,8800
bio_embeddings_duongttr/utilities/model_size_impl.py,sha256=x2eOLG3wVSKterRatzmjRbmIslqz55B_itOeWNwDUdc,2067
bio_embeddings_duongttr/utilities/model_size_main.py,sha256=01jyR5BZR1vgj7vEjB1SeFKR7M-pEWcGyCc53sZevIs,2031
bio_embeddings_duongttr/utilities/model_size_old.py,sha256=-3ywQfKyBjeZDqqlP6cMY2s5c-K2zwIoSmbeKumO0RI,1704
bio_embeddings_duongttr/utilities/pipeline.py,sha256=mMKfADjUogaprFX2CgJ2ssUvECVWSxs8kaEg6-JgRZo,15515
bio_embeddings_duongttr/utilities/remote_file_retriever.py,sha256=XuaI7ah-mmopYMkTqcEByxfXM6qO0CP_ku3v1VAjCvk,4525
bio_embeddings_duongttr/visualize/__init__.py,sha256=g1l66-RoocuRz0GrKdQ6NkwaXH03df0V8st84WRGFiA,425
bio_embeddings_duongttr/visualize/mutagenesis.py,sha256=pBhTyQJJfAVI47OksxDSQfHUDYAyxlq19nqWPNDIUjo,2725
bio_embeddings_duongttr/visualize/pipeline.py,sha256=I56TrBgQnGvSoT0jQ3WlBMLrH0btTwZDrPs7qbEI4_U,8030
bio_embeddings_duongttr/visualize/plotly_plots.py,sha256=p5nAVDkgrq1Lsd4meZ6TpFZEuwWSeBYQJk1XyIEjK5Q,4270
pyproject.toml,sha256=oQO4Tjpy3JzV5A-4i0yeQ7lr6SOb9FA2bb5YOvAa2AE,4833
bio_embeddings_duongttr-0.2.3.dist-info/entry_points.txt,sha256=ahGBOXbAGfUjeOLSkWO9qgicfx-_e_CxwzNy1xmmp5o,68
bio_embeddings_duongttr-0.2.3.dist-info/LICENSE.md,sha256=g-ugNA9Aq4lLzjwwT6peZBgMFHidkqKGyMa4QmQpPvQ,1094
bio_embeddings_duongttr-0.2.3.dist-info/WHEEL,sha256=DA86_h4QwwzGeRoz62o1svYt5kGEXpoUTuTtwzoTb30,83
bio_embeddings_duongttr-0.2.3.dist-info/METADATA,sha256=4Fh-00_uIxo8NgILN_qZVYm10MEB4wB0iWQsYoU56sI,15017
bio_embeddings_duongttr-0.2.3.dist-info/RECORD,,
