.gitignore
.readthedocs.yml
AUTHORS.txt
CHANGELOG.rst
COPYING
COPYING.LESSER
README.rst
pyproject.toml
setup.py
tox.ini
.github/workflows/publish-sdist.yml
.github/workflows/run-tox.yml
bluepysnap/__init__.py
bluepysnap/_doctools.py
bluepysnap/_plotting.py
bluepysnap/_version.py
bluepysnap/bbp.py
bluepysnap/circuit.py
bluepysnap/circuit_ids.py
bluepysnap/circuit_ids_types.py
bluepysnap/circuit_validation.py
bluepysnap/cli.py
bluepysnap/config.py
bluepysnap/exceptions.py
bluepysnap/frame_report.py
bluepysnap/input.py
bluepysnap/morph.py
bluepysnap/network.py
bluepysnap/neuron_models.py
bluepysnap/node_sets.py
bluepysnap/query.py
bluepysnap/settings.py
bluepysnap/simulation.py
bluepysnap/simulation_validation.py
bluepysnap/sonata_constants.py
bluepysnap/spike_report.py
bluepysnap/utils.py
bluepysnap.egg-info/PKG-INFO
bluepysnap.egg-info/SOURCES.txt
bluepysnap.egg-info/dependency_links.txt
bluepysnap.egg-info/entry_points.txt
bluepysnap.egg-info/requires.txt
bluepysnap.egg-info/top_level.txt
bluepysnap/edges/__init__.py
bluepysnap/edges/edge_population.py
bluepysnap/edges/edge_population_stats.py
bluepysnap/edges/edges.py
bluepysnap/nodes/__init__.py
bluepysnap/nodes/node_population.py
bluepysnap/nodes/nodes.py
bluepysnap/schemas/__init__.py
bluepysnap/schemas/circuit.yaml
bluepysnap/schemas/schemas.py
bluepysnap/schemas/simulation.yaml
bluepysnap/schemas/definitions/datatypes.yaml
bluepysnap/schemas/definitions/edge.yaml
bluepysnap/schemas/definitions/node.yaml
bluepysnap/schemas/definitions/simulation_input.yaml
bluepysnap/schemas/edge/chemical.yaml
bluepysnap/schemas/edge/chemical_virtual.yaml
bluepysnap/schemas/edge/electrical.yaml
bluepysnap/schemas/edge/endfoot.yaml
bluepysnap/schemas/edge/glialglial.yaml
bluepysnap/schemas/edge/neuromodulatory.yaml
bluepysnap/schemas/edge/synapse_astrocyte.yaml
bluepysnap/schemas/node/astrocyte.yaml
bluepysnap/schemas/node/biophysical.yaml
bluepysnap/schemas/node/vasculature.yaml
bluepysnap/schemas/node/virtual.yaml
doc/Makefile
doc/make.bat
doc/source/api.rst
doc/source/changelog.rst
doc/source/circuits.rst
doc/source/conf.py
doc/source/index.rst
doc/source/notebooks.rst
doc/source/simulations.rst
doc/source/utilities.rst
doc/source/_images/BlueBrainSNAP.jpg
doc/source/notebooks/01_circuits.ipynb
doc/source/notebooks/02_node_populations.ipynb
doc/source/notebooks/03_node_properties.ipynb
doc/source/notebooks/04_edge_properties.ipynb
doc/source/notebooks/05_simulations.ipynb
doc/source/notebooks/06_spike_reports.ipynb
doc/source/notebooks/07_frame_reports.ipynb
doc/source/notebooks/08_nodesets.ipynb
doc/source/notebooks/09_node_queries.ipynb
doc/source/notebooks/10_edge_queries.ipynb
doc/source/notebooks/11_iter_connections.ipynb
tests/test__doctools.py
tests/test__plotting.py
tests/test_circuit.py
tests/test_circuit_ids.py
tests/test_circuit_ids_types.py
tests/test_circuit_validation.py
tests/test_cli.py
tests/test_edge_misc.py
tests/test_edge_population.py
tests/test_edge_population_stats.py
tests/test_edges.py
tests/test_frame_report.py
tests/test_full_config.py
tests/test_input.py
tests/test_morph.py
tests/test_neuron_models.py
tests/test_node_population.py
tests/test_node_sets.py
tests/test_nodes.py
tests/test_partial_config.py
tests/test_query.py
tests/test_schema_validation_simulation.py
tests/test_schemas.py
tests/test_settings.py
tests/test_simulation.py
tests/test_simulation_validation.py
tests/test_sonata_constants.py
tests/test_spike_report.py
tests/test_utils.py
tests/test_version.py
tests/utils.py
tests/data/circuit_config.json
tests/data/edges.h5
tests/data/edges_complete_graph.h5
tests/data/edges_single_pop.h5
tests/data/input_spikes.h5
tests/data/mock_electrodes_file.h5
tests/data/node_sets.json
tests/data/node_sets_extra.json
tests/data/node_sets_file.json
tests/data/node_sets_simple.json
tests/data/node_types.csv
tests/data/nodes.h5
tests/data/nodes_no_rotation.h5
tests/data/nodes_no_xz_rotation.h5
tests/data/nodes_points.h5
tests/data/nodes_quaternions.h5
tests/data/nodes_quaternions_w_missing.h5
tests/data/nodes_single_pop.h5
tests/data/nodes_with_library_large.h5
tests/data/nodes_with_library_small.h5
tests/data/simulation_config.json
tests/data/biophysical_neuron_models/small_bio-A.hoc
tests/data/biophysical_neuron_models/small_bio-B.hoc
tests/data/biophysical_neuron_models/small_bio-C.hoc
tests/data/biophysical_neuron_models/small_bio.hoc
tests/data/mechanisms_dir/.gitkeep
tests/data/morphologies/container-morphs.h5
tests/data/morphologies/morph-A.h5
tests/data/morphologies/morph-A.swc
tests/data/morphologies/morph-B.asc
tests/data/morphologies/morph-B.h5
tests/data/morphologies/morph-B.swc
tests/data/morphologies/morph-C.asc
tests/data/morphologies/morph-C.swc
tests/data/morphologies/morph-D.swc
tests/data/morphologies/morph-E.swc
tests/data/morphologies/morph-F.swc
tests/data/morphologies/morph-G.swc
tests/data/point_neuron_models/empty_bio.nml
tests/data/reporting/compartment_named.h5
tests/data/reporting/create_reports.py
tests/data/reporting/lfp_report.h5
tests/data/reporting/log_spikes.log
tests/data/reporting/soma_named.h5
tests/data/reporting/soma_report.h5
tests/data/reporting/spikes.h5