.gitignore
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
.github/workflows/ci.yml
.github/workflows/publish.yml
chromdyn/__init__.py
chromdyn/_version.py
chromdyn/check_install.py
chromdyn/chromatin_dynamics.py
chromdyn/forcefield.py
chromdyn/hic_utils.py
chromdyn/integrators.py
chromdyn/optimization.py
chromdyn/platforms.py
chromdyn/reporters.py
chromdyn/topology.py
chromdyn/traj_utils.py
chromdyn/utilities.py
chromdyn.egg-info/PKG-INFO
chromdyn.egg-info/SOURCES.txt
chromdyn.egg-info/dependency_links.txt
chromdyn.egg-info/requires.txt
chromdyn.egg-info/top_level.txt
notebooks/Tutorial_Simulation.ipynb
notebooks/Tutorial_active.ipynb
scripts/pre_release.sh
tests/run_test.py
tests/test.ipynb