.gitignore
.pylintrc
LICENSE.md
README.md
requirements-etel.txt
requirements.txt
run.py
run_gt_ndcg.py
setup.py
.github/workflows/analysis.yml
.github/workflows/build.yml
docs/imgs/portia.svg
portia/__init__.py
portia/core.py
portia/correction.py
portia/dataset.py
portia/end_to_end.py
portia/exceptions.py
portia/la.py
portia/etel/__init__.py
portia/etel/box_cox.py
portia/etel/var_transformation.py
portia/gt/__init__.py
portia/gt/causal_structure.py
portia/gt/evaluation.py
portia/gt/grn.py
portia/gt/symmetry.py
portia/gt/topology.py
portia/gt/utils.py
portia/insilico/__init__.py
portia/insilico/dataset.py
portia/insilico/variable.py
portia/optim/__init__.py
portia/optim/local_convergence.py
portia_grn.egg-info/PKG-INFO
portia_grn.egg-info/SOURCES.txt
portia_grn.egg-info/dependency_links.txt
portia_grn.egg-info/requires.txt
portia_grn.egg-info/top_level.txt
test-data/dataset1.expression.txt
test-data/dataset1.goldstandard.txt
test-data/dataset2.expression.txt
test-data/dataset2.goldstandard.txt
test-data/dataset2.kos.txt
test-data/dataset2.tfs.txt
test-data/generate.py
tests/test-correction.py
tests/test-grn-inference.py
tests/test-la.py
tests/test-ndcg.py