.travis.yml
CHANGELOG.rst
DEVELOPING.rst
MANIFEST.in
README.rst
SConstruct
pyproject.toml
pytest.ini
requirements.txt
testone
bin/argparse.bash
bin/install_fasttree.sh
bin/install_infernal_and_easel.sh
bin/install_pplacer.sh
bin/install_vsearch.sh
dev/README.txt
dev/ghpages-init.sh
dev/ghpages-publish.sh
dev/mkenvs.sh
dev/run_travis.sh
docs/Makefile
docs/bioscons.rst
docs/conf.py
docs/index.rst
examples/slurm_examples/slurm_queue.py
examples/slurm_examples/slurm_queue_all.py
src/bioscons/__init__.py
src/bioscons/fast.py
src/bioscons/fileutils.py
src/bioscons/slurm.py
src/bioscons/utils.py
src/bioscons.egg-info/PKG-INFO
src/bioscons.egg-info/SOURCES.txt
src/bioscons.egg-info/dependency_links.txt
src/bioscons.egg-info/requires.txt
src/bioscons.egg-info/top_level.txt
template/SConstruct
template/settings.conf
tests/SConstruct
tests/__init__.py
tests/test_fileutils.py
tests/test_slurm.py
tests/slurm/SConstruct
tests/slurm/SConstruct-hutch
tests/slurm/test.sh
tests/testfiles/bacteria16S_508_mod5.cm.bz2
tests/testfiles/lactos.fasta
tests/testfiles/lactos_dedupinfo.txt
tests/testfiles/short16s.fasta
tests/testfiles/short16s.phy
tests/testfiles/short16s.sto
tests/testfiles/lactobacillus2-0.3.refpkg/CONTENTS.json
tests/testfiles/lactobacillus2-0.3.refpkg/RAxML_info.lactobacillus2
tests/testfiles/lactobacillus2-0.3.refpkg/RAxML_result.lactobacillus2
tests/testfiles/lactobacillus2-0.3.refpkg/bacteria16S_508_mod5.cm
tests/testfiles/lactobacillus2-0.3.refpkg/chosen.csv-convex
tests/testfiles/lactobacillus2-0.3.refpkg/chosen.fasta-convex
tests/testfiles/lactobacillus2-0.3.refpkg/lactobacillus2.sto-convex
tests/testfiles/lactobacillus2-0.3.refpkg/taxtable.csv
tests/testfiles/lactobacillus2-0.3.refpkg/tmp5q3HzL
tests/testfiles/lactobacillus2-0.3.refpkg/tmp7bBF_U
tests/testfiles/mostly_empty.refpkg/CONTENTS.json
tests/testfiles/mostly_empty.refpkg/bacteria16S_508_mod5.cm