CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/allomix/__init__.py
src/allomix/analysis.py
src/allomix/cli.py
src/allomix/constants.py
src/allomix/genotype.py
src/allomix/py.typed
src/allomix/results.py
src/allomix/simulate.py
src/allomix.egg-info/PKG-INFO
src/allomix.egg-info/SOURCES.txt
src/allomix.egg-info/dependency_links.txt
src/allomix.egg-info/entry_points.txt
src/allomix.egg-info/requires.txt
src/allomix.egg-info/top_level.txt
src/allomix/calibration/__init__.py
src/allomix/calibration/bias.py
src/allomix/calibration/contamination_table.py
src/allomix/calibration/error_rates.py
src/allomix/estimate/__init__.py
src/allomix/estimate/chimerism.py
src/allomix/estimate/likelihood.py
src/allomix/qc/__init__.py
src/allomix/qc/caller.py
src/allomix/qc/host_presence.py
src/allomix/qc/panel_qc.py
src/allomix/qc/qc.py
src/allomix/qc/relatedness.py
src/allomix/qc/runmeta.py
src/allomix/qc/sample_contamination.py
src/allomix/report/__init__.py
src/allomix/report/report.py
src/allomix/report/html/__init__.py
src/allomix/report/html/charts.py
src/allomix/report/html/context.py
src/allomix/report/html/engine.py
src/allomix/report/html/format.py
src/allomix/report/html/meta.py
src/allomix/report/html/pdf.py
src/allomix/report/html/render.py
src/allomix/report/html/timeline.py
src/allomix/report/html/templates/base.html
src/allomix/report/html/templates/macros.html
src/allomix/report/html/templates/report.html
src/allomix/report/html/templates/report.js
src/allomix/report/html/templates/styles.css
src/allomix/report/html/templates/timeline.html
src/allomix/report/html/templates/pdf/report.html
src/allomix/report/html/templates/pdf/styles.css
src/allomix/report/html/templates/pdf/timeline.html
tests/test_analysis.py
tests/test_bias.py
tests/test_caller.py
tests/test_chimerism.py
tests/test_contamination_table.py
tests/test_error_rates.py
tests/test_extract_run_units.py
tests/test_fast_grid_estimator.py
tests/test_genotype.py
tests/test_host_presence.py
tests/test_html_report.py
tests/test_integration.py
tests/test_multidonor.py
tests/test_panel_qc.py
tests/test_qc.py
tests/test_relatedness.py
tests/test_report.py
tests/test_runmeta.py
tests/test_sample_contamination.py
tests/test_simulate.py