# Developer smoke test using a completed mtDNA run

run_dir=/path/to/completed/cbicall_mit_run
./mtb2json.py -i "$run_dir/01_mtoolbox/mit_prioritized_variants.txt" -f json > "$run_dir/01_mtoolbox/mit.filtered.json"
./mtb2html.py --id CNAG99901P --job-id 176099009134887 --filtered-json "$run_dir/01_mtoolbox/mit.filtered.json" --out "$run_dir/02_browser/mtdna.html"

xdg-open "$run_dir/02_browser/mtdna.html"
