torch<2.6,>=2.5
torchvision<0.21,>=0.20
torchaudio<2.6,>=2.5
lightning<2.7,>=2.4
numpy<3,>=1.23
scipy<2,>=1.9
pandas<3,>=1.5
scikit-learn<2,>=1.2
matplotlib<4,>=3.7
anndata<0.13,>=0.10
mudata<0.4,>=0.3
scanpy<2,>=1.10
tqdm<5,>=4.64
requests<3,>=2.28
toml<1,>=0.10
natsort<9,>=8

[dev]
pytest<9,>=7
pytest-cov<6,>=4
ruff<1,>=0.5
mypy<2,>=1.7
build<2,>=1
twine<6,>=5
pip-tools<8,>=7

[docs]
mkdocs<2,>=1.5
mkdocstrings[python]<1,>=0.24
mkdocs-material<10,>=9

[notebook]
ipykernel<7,>=6
