README.md
pyproject.toml
src/hcsegment/__init__.py
src/hcsegment/cli.py
src/hcsegment/run_denoise.py
src/hcsegment/run_mask_neurites.py
src/hcsegment/run_mask_nuclei.py
src/hcsegment/run_stitch.py
src/hcsegment.egg-info/PKG-INFO
src/hcsegment.egg-info/SOURCES.txt
src/hcsegment.egg-info/dependency_links.txt
src/hcsegment.egg-info/entry_points.txt
src/hcsegment.egg-info/requires.txt
src/hcsegment.egg-info/top_level.txt
src/hcsegment/modules/denoise.py
src/hcsegment/modules/image_stitch.py
src/hcsegment/modules/io_utils.py
src/hcsegment/modules/neurite_segment.py
src/hcsegment/modules/normalizations.py
src/hcsegment/modules/nuclei_segment.py
tests/test_denoise.py
tests/test_ignore_stitched.py
tests/test_io_utils.py
tests/test_normalizations.py
tests/test_to_zarr.py