LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
hitlist/__init__.py
hitlist/aggregate.py
hitlist/apm.py
hitlist/builder.py
hitlist/bulk_proteomics.py
hitlist/cell_name_parser.py
hitlist/cli.py
hitlist/condition_categories.py
hitlist/curation.py
hitlist/downloads.py
hitlist/export.py
hitlist/genes.py
hitlist/indexer.py
hitlist/line_expression.py
hitlist/mappings.py
hitlist/observations.py
hitlist/peptide_modifications.py
hitlist/pmhc_query.py
hitlist/predict.py
hitlist/proteome.py
hitlist/qc.py
hitlist/report.py
hitlist/samples.py
hitlist/scanner.py
hitlist/supplement.py
hitlist/version.py
hitlist.egg-info/PKG-INFO
hitlist.egg-info/SOURCES.txt
hitlist.egg-info/dependency_links.txt
hitlist.egg-info/entry_points.txt
hitlist.egg-info/requires.txt
hitlist.egg-info/top_level.txt
hitlist/data/__init__.py
hitlist/data/cell_lines.yaml
hitlist/data/data_assets.yaml
hitlist/data/line_expression_anchors.yaml
hitlist/data/monoallelic_lines.yaml
hitlist/data/pmid_overrides.yaml
hitlist/data/supplementary.yaml
hitlist/data/tissue_categories.yaml
hitlist/data/bulk_proteomics/__init__.py
hitlist/data/bulk_proteomics/sources.yaml
hitlist/data/line_expression/__init__.py
hitlist/data/line_expression/gm12878_encode_rnaseq_tpm.csv.gz
hitlist/data/line_expression/sources.yaml
hitlist/data/supplementary/abelin_2019_dr_tissue.csv
hitlist/data/supplementary/abelin_2019_maptac_class1.csv
hitlist/data/supplementary/gomez_zepeda_2024_hela.csv
hitlist/data/supplementary/gomez_zepeda_2024_jy.csv
hitlist/data/supplementary/gomez_zepeda_2024_plasma.csv
hitlist/data/supplementary/gomez_zepeda_2024_raji.csv
hitlist/data/supplementary/gomez_zepeda_2024_skmel37.csv
hitlist/data/supplementary/shapiro_2025_hap1_b2m_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_calr_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_canx_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_erap1_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_ganab_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_irf2_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_pdia3_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_sppl3_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_tap1_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_tap2_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_tapbp_ko.csv
hitlist/data/supplementary/shapiro_2025_hap1_wildtype.csv
tests/test_aggregate.py
tests/test_apm.py
tests/test_apply_winners_vectorized.py
tests/test_build_smoke.py
tests/test_builder.py
tests/test_bulk_proteomics.py
tests/test_cell_name_parser.py
tests/test_cli_build_group.py
tests/test_cli_export_cleanup.py
tests/test_cli_pmhc_samples.py
tests/test_cli_version.py
tests/test_condition_categories.py
tests/test_curation.py
tests/test_data_assets.py
tests/test_downloads_timeout.py
tests/test_export.py
tests/test_genes.py
tests/test_line_expression.py
tests/test_mappings.py
tests/test_multi_proteome_flanking.py
tests/test_observations.py
tests/test_peptide_modifications.py
tests/test_pmhc_query.py
tests/test_predict.py
tests/test_proteome.py
tests/test_qc.py
tests/test_report.py
tests/test_samples.py
tests/test_scanner.py
tests/test_supplement.py
tests/test_supplementary_build_e2e.py
tests/test_xdist_cache.py