API

Import MESA as:

import mesa as ms

Multiomics

Ecospatial

ecospatial.generate_patches(spatial_data, ...)	Generate a list of patches from a spatial data object.
ecospatial.calculate_shannon_entropy(counts)	Calculate the Shannon entropy of a set of counts.
ecospatial.calculate_diversity_index(...[, ...])	Calculate the heterogeneity index for a set of patches.
ecospatial.diversity_heatmap(spatial_data, ...)	This function visualizes the heterogeneity indices as a heatmap on the original spatial data.
ecospatial.global_spatial_stats(grid[, ...])	Perform global spatial autocorrelation analysis.
ecospatial.local_spatial_stats(grid[, mode, ...])	Compute local indicators of spatial association (LISA) for local spatial autocorrelation, and return significant hotspots and coldspots.
ecospatial.calculate_MDI(spatial_data, ...)	Calculate the multiscale diversity index (MDI).
ecospatial.calculate_GDI(spatial_data, ...)
ecospatial.calculate_DPI(spatial_data, ...)	Calculate the proximity index for spatial data regions, identifying hotspots or coldspots based on diversity indices.
ecospatial.spot_cellfreq(spatial_data, ...)