# Python
__pycache__/
*.py[cod]
*.pyo
*.pyd
*.egg-info/
build/
dist/
.eggs/

# Virtual environments
.venv/
venv/
env/

# Tool caches
.mypy_cache/
.pytest_cache/
.ruff_cache/
.coverage
htmlcov/

# Local configuration and credentials
.env
.env.*
.pypirc

# Research data and generated outputs
data/
datasets/
checkpoints/
models/
outputs/
results/
runs/
*.ome.tif
*.ome.tiff
*.ndpi
*.scn
*.svs
*.czi

# System/editor files
.DS_Store
.idea/
.vscode/
