.readthedocs.yaml
CHANGELOG.rst
Jenkinsfile
LICENSE
Makefile
README.rst
pyproject.toml
python_versions.json
../../.gitattributes
../../.gitignore
../../.readthedocs.yaml
../../CLAUDE.md
../../CODE_OF_CONDUCT.rst
../../CONTRIBUTING.rst
../../Jenkinsfile
../../LICENSE
../../README.md
../../pyproject.toml
../../.claude-plugin/marketplace.json
../../.github/CODEOWNERS
../../.github/pull_request_template.md
../../.github/workflows/ci.yml
../../.github/workflows/release-ai-tools.yml
../../.github/workflows/release.yml
../../tools/ai-tools/CHANGELOG.rst
../../tools/ai-tools/LICENSE
../../tools/ai-tools/README.rst
../../tools/ai-tools/.claude-plugin/plugin.json
../../tools/ai-tools/agents/_diff_analyzer.md
../../tools/ai-tools/agents/_duplicate_finder.md
../../tools/ai-tools/agents/_feature_implementer.md
../../tools/ai-tools/agents/_hypothesis_tester.md
../../tools/ai-tools/agents/_review_design.md
../../tools/ai-tools/agents/_review_documentation.md
../../tools/ai-tools/agents/_review_dry.md
../../tools/ai-tools/agents/_review_maintainability.md
../../tools/ai-tools/agents/_review_tests.md
../../tools/ai-tools/agents/_split_proposer.md
../../tools/ai-tools/agents/_test_writer.md
../../tools/ai-tools/agents/_type_hint_file.md
../../tools/ai-tools/agents/_validator.md
../../tools/ai-tools/agents/code_reviewer.md
../../tools/ai-tools/agents/framework_developer.md
../../tools/ai-tools/agents/model_regression_debugger.md
../../tools/ai-tools/commands/code-reviewer.md
../../tools/ai-tools/commands/framework-development.md
../../tools/ai-tools/commands/git-rescue.md
../../tools/ai-tools/commands/model-regression-debugger.md
../../tools/ai-tools/commands/type-hinter.md
../../tools/ai-tools/skills/_review-core/SKILL.md
../../tools/ai-tools/skills/brainstorming/SKILL.md
../../tools/ai-tools/skills/brainstorming/visual-companion.md
../../tools/ai-tools/skills/brainstorming/scripts/frame-template.html
../../tools/ai-tools/skills/brainstorming/scripts/helper.js
../../tools/ai-tools/skills/brainstorming/scripts/server.cjs
../../tools/ai-tools/skills/brainstorming/scripts/start-server.sh
../../tools/ai-tools/skills/brainstorming/scripts/stop-server.sh
../../tools/ai-tools/skills/commit-splitter/SKILL.md
../../tools/ai-tools/skills/continuous-integration/SKILL.md
../../tools/ai-tools/skills/design-doc/SKILL.md
../../tools/ai-tools/skills/environments/SKILL.md
../../tools/ai-tools/skills/framework-clis/SKILL.md
../../tools/ai-tools/skills/make-commands/SKILL.md
../../tools/ai-tools/skills/plugin-setup/SKILL.md
../../tools/ai-tools/skills/pytest/SKILL.md
../../tools/ai-tools/skills/team-conventions/SKILL.md
../../tools/ai-tools/skills/ticket-triage/SKILL.md
../../tools/ai-tools/skills/vivarium-research/SKILL.md
../artifact/.readthedocs.yaml
../artifact/CHANGELOG.rst
../artifact/Jenkinsfile
../artifact/LICENSE
../artifact/Makefile
../artifact/README.rst
../artifact/pyproject.toml
../artifact/python_versions.json
../artifact/docs/Makefile
../artifact/docs/nitpick-exceptions
../artifact/docs/source/conf.py
../artifact/docs/source/index.rst
../artifact/docs/source/_static/style.css
../artifact/docs/source/api_reference/artifact.rst
../artifact/docs/source/api_reference/entity_key.rst
../artifact/docs/source/api_reference/hdf.rst
../artifact/docs/source/api_reference/index.rst
../artifact/docs/source/tutorials/artifact.rst
../artifact/src/vivarium/artifact/__init__.py
../artifact/src/vivarium/artifact/artifact.py
../artifact/src/vivarium/artifact/entity_key.py
../artifact/src/vivarium/artifact/hdf.py
../artifact/src/vivarium/artifact/py.typed
../artifact/tests/__init__.py
../artifact/tests/conftest.py
../artifact/tests/test_artifact.py
../artifact/tests/test_entity_key.py
../artifact/tests/test_hdf.py
../artifact/tests/test_package.py
../artifact/tests/test_data/artifact.hdf
../build-utils/.zenodo.json
../build-utils/CHANGELOG.rst
../build-utils/Jenkinsfile
../build-utils/Jenkinsfile.cleanup
../build-utils/Jenkinsfile.shared-env
../build-utils/LICENSE
../build-utils/Makefile
../build-utils/README.rst
../build-utils/pyproject.toml
../build-utils/python_versions.json
../build-utils/setup.py
../build-utils/bootstrap/resources/scripts/get_vbu_version.py
../build-utils/bootstrap/vars/get_vbu_version.groovy
../build-utils/bootstrap/vars/load_bootstrap_scripts.groovy
../build-utils/resources/multiPipelines.groovy
../build-utils/resources/makefiles/base.mk
../build-utils/resources/makefiles/test.mk
../build-utils/resources/scripts/model_lineage.sh
../build-utils/resources/scripts/validate_tag_version.sh
../build-utils/src/vivarium/build_utils/__init__.py
../build-utils/src/vivarium/build_utils/resources.py
../build-utils/tests/test_package.py
../build-utils/vars/build_stages.groovy
../build-utils/vars/get_package_subdir.groovy
../build-utils/vars/get_python_versions.groovy
../build-utils/vars/git_utils.groovy
../build-utils/vars/github_slack_mapper.groovy
../build-utils/vars/has_changelog_update.groovy
../build-utils/vars/has_deployable_change.groovy
../build-utils/vars/load_shared_files.groovy
../build-utils/vars/monorepo.groovy
../build-utils/vars/previous_build_passed.groovy
../build-utils/vars/reusable_pipeline.groovy
../cluster-tools/.gitignore
../cluster-tools/.readthedocs.yaml
../cluster-tools/.zenodo.json
../cluster-tools/CHANGELOG.rst
../cluster-tools/Jenkinsfile
../cluster-tools/LICENSE
../cluster-tools/Makefile
../cluster-tools/README.rst
../cluster-tools/pyproject.toml
../cluster-tools/python_versions.json
../cluster-tools/docs/Makefile
../cluster-tools/docs/nitpick-exceptions
../cluster-tools/docs/source/branch.rst
../cluster-tools/docs/source/conf.py
../cluster-tools/docs/source/dagger.rst
../cluster-tools/docs/source/distributed_runner.rst
../cluster-tools/docs/source/glossary.rst
../cluster-tools/docs/source/index.rst
../cluster-tools/docs/source/installation.rst
../cluster-tools/docs/source/logging.rst
../cluster-tools/docs/source/yaml_basics.rst
../cluster-tools/docs/source/_static/style.css
../cluster-tools/docs/source/_templates/layout.html
../cluster-tools/docs/source/api_reference/index.rst
../cluster-tools/docs/source/api_reference/utilities.rst
../cluster-tools/docs/source/api_reference/core/cli_tools.rst
../cluster-tools/docs/source/api_reference/core/index.rst
../cluster-tools/docs/source/api_reference/core/logs.rst
../cluster-tools/docs/source/api_reference/core/cluster/cli_options.rst
../cluster-tools/docs/source/api_reference/core/cluster/index.rst
../cluster-tools/docs/source/api_reference/core/cluster/interface.rst
../cluster-tools/docs/source/api_reference/dagger/cli.rst
../cluster-tools/docs/source/api_reference/dagger/index.rst
../cluster-tools/docs/source/api_reference/dagger/runner.rst
../cluster-tools/docs/source/api_reference/dagger/config/builder.rst
../cluster-tools/docs/source/api_reference/dagger/config/config.rst
../cluster-tools/docs/source/api_reference/dagger/config/index.rst
../cluster-tools/docs/source/api_reference/dagger/config/interface.rst
../cluster-tools/docs/source/api_reference/dagger/config/parsing.rst
../cluster-tools/docs/source/api_reference/dagger/config/serialization.rst
../cluster-tools/docs/source/api_reference/dagger/config/validation.rst
../cluster-tools/docs/source/api_reference/psimulate/branches.rst
../cluster-tools/docs/source/api_reference/psimulate/cli.rst
../cluster-tools/docs/source/api_reference/psimulate/environment.rst
../cluster-tools/docs/source/api_reference/psimulate/index.rst
../cluster-tools/docs/source/api_reference/psimulate/jobs.rst
../cluster-tools/docs/source/api_reference/psimulate/model_specification.rst
../cluster-tools/docs/source/api_reference/psimulate/paths.rst
../cluster-tools/docs/source/api_reference/psimulate/performance_logger.rst
../cluster-tools/docs/source/api_reference/psimulate/programming_environment.rst
../cluster-tools/docs/source/api_reference/psimulate/runner.rst
../cluster-tools/docs/source/api_reference/psimulate/results/cli_options.rst
../cluster-tools/docs/source/api_reference/psimulate/results/index.rst
../cluster-tools/docs/source/api_reference/psimulate/results/writing.rst
../cluster-tools/docs/source/api_reference/psimulate/worker/index.rst
../cluster-tools/docs/source/api_reference/psimulate/worker/load_test_work_horse.rst
../cluster-tools/docs/source/api_reference/psimulate/worker/task_runner.rst
../cluster-tools/docs/source/api_reference/psimulate/worker/vivarium_work_horse.rst
../cluster-tools/docs/source/api_reference/vipin/cli.rst
../cluster-tools/docs/source/api_reference/vipin/index.rst
../cluster-tools/docs/source/api_reference/vipin/perf_counters.rst
../cluster-tools/docs/source/api_reference/vipin/perf_report.rst
../cluster-tools/src/vivarium/cluster_tools/__init__.py
../cluster-tools/src/vivarium/cluster_tools/py.typed
../cluster-tools/src/vivarium/cluster_tools/utilities.py
../cluster-tools/src/vivarium/cluster_tools/core/__init__.py
../cluster-tools/src/vivarium/cluster_tools/core/cli_tools.py
../cluster-tools/src/vivarium/cluster_tools/core/logs.py
../cluster-tools/src/vivarium/cluster_tools/core/notifications.py
../cluster-tools/src/vivarium/cluster_tools/core/cluster/__init__.py
../cluster-tools/src/vivarium/cluster_tools/core/cluster/cli_options.py
../cluster-tools/src/vivarium/cluster_tools/core/cluster/interface.py
../cluster-tools/src/vivarium/cluster_tools/core/cluster/validation.py
../cluster-tools/src/vivarium/cluster_tools/core/jobmon/__init__.py
../cluster-tools/src/vivarium/cluster_tools/core/jobmon/cli_options.py
../cluster-tools/src/vivarium/cluster_tools/core/jobmon/client.py
../cluster-tools/src/vivarium/cluster_tools/core/jobmon/env.py
../cluster-tools/src/vivarium/cluster_tools/dagger/__init__.py
../cluster-tools/src/vivarium/cluster_tools/dagger/cli.py
../cluster-tools/src/vivarium/cluster_tools/dagger/runner.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/__init__.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/builder.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/config.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/interface.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/parsing.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/serialization.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/utilities.py
../cluster-tools/src/vivarium/cluster_tools/dagger/config/validation.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/__init__.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/branches.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/cli.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/environment.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/jobmon_workflow.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/jobs.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/model_specification.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/paths.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/performance_logger.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/pip_env.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/runner.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/results/__init__.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/results/cli_options.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/results/writing.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/worker/__init__.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/worker/load_test_work_horse.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/worker/task_runner.py
../cluster-tools/src/vivarium/cluster_tools/psimulate/worker/vivarium_work_horse.py
../cluster-tools/src/vivarium/cluster_tools/testing/__init__.py
../cluster-tools/src/vivarium/cluster_tools/testing/fail_once_component.py
../cluster-tools/src/vivarium/cluster_tools/vipin/__init__.py
../cluster-tools/src/vivarium/cluster_tools/vipin/cli.py
../cluster-tools/src/vivarium/cluster_tools/vipin/perf_counters.py
../cluster-tools/src/vivarium/cluster_tools/vipin/perf_report.py
../cluster-tools/tests/__init__.py
../cluster-tools/tests/test_cli_tools.py
../cluster-tools/tests/test_notifications.py
../cluster-tools/tests/dagger/__init__.py
../cluster-tools/tests/dagger/test_cli.py
../cluster-tools/tests/dagger/test_e2e.py
../cluster-tools/tests/dagger/test_runner.py
../cluster-tools/tests/dagger/config/__init__.py
../cluster-tools/tests/dagger/config/conftest.py
../cluster-tools/tests/dagger/config/test_builder.py
../cluster-tools/tests/dagger/config/test_config.py
../cluster-tools/tests/dagger/config/test_interface.py
../cluster-tools/tests/dagger/config/utilities.py
../cluster-tools/tests/psimulate/__init__.py
../cluster-tools/tests/psimulate/conftest.py
../cluster-tools/tests/psimulate/test_appending_perf_logs.py
../cluster-tools/tests/psimulate/test_branches.py
../cluster-tools/tests/psimulate/test_cli.py
../cluster-tools/tests/psimulate/test_e2e.py
../cluster-tools/tests/psimulate/test_jobmon_workflow.py
../cluster-tools/tests/psimulate/test_jobs.py
../cluster-tools/tests/psimulate/test_runner.py
../cluster-tools/tests/psimulate/test_utilities.py
../cluster-tools/tests/psimulate/cluster/__init__.py
../cluster-tools/tests/psimulate/cluster/test_interface.py
../cluster-tools/tests/psimulate/data/artifact_perf_df.csv
../cluster-tools/tests/psimulate/data/artifactless_perf_df.csv
../cluster-tools/tests/psimulate/data/e2e_branches.yaml
../cluster-tools/tests/psimulate/data/e2e_model_spec.yaml
../cluster-tools/tests/psimulate/data/e2e_model_spec_fail_once.yaml
../cluster-tools/tests/psimulate/results/__init__.py
../cluster-tools/tests/psimulate/results/test_writing.py
../cluster-tools/tests/psimulate/worker/__init__.py
../cluster-tools/tests/psimulate/worker/test_logging.py
../cluster-tools/tests/psimulate/worker/test_task_runner.py
../cluster-tools/tests/psimulate/worker/test_vivarium_work_horse.py
../cluster-tools/tests/vipin/__init__.py
../cluster-tools/tests/vipin/test_perf_report.py
../compat/.gitignore
../compat/CHANGELOG.rst
../compat/Jenkinsfile
../compat/LICENSE
../compat/Makefile
../compat/README.md
../compat/pyproject.toml
../compat/python_versions.json
../compat/vivarium_compat.pth
../compat/src/vivarium_compat/__init__.py
../compat/src/vivarium_compat/_compat.py
../compat/tests/test_compat.py
../compat/tests/test_package.py
../compat/tests/test_removal_deadline.py
../compat/tests/test_wheel_install.py
../config-tree/.readthedocs.yaml
../config-tree/CHANGELOG.rst
../config-tree/Jenkinsfile
../config-tree/LICENSE
../config-tree/Makefile
../config-tree/README.rst
../config-tree/pyproject.toml
../config-tree/python_versions.json
../config-tree/docs/Makefile
../config-tree/docs/nitpick-exceptions
../config-tree/docs/source/conf.py
../config-tree/docs/source/index.rst
../config-tree/docs/source/_static/style.css
../config-tree/docs/source/api_reference/exceptions.rst
../config-tree/docs/source/api_reference/index.rst
../config-tree/docs/source/api_reference/main.rst
../config-tree/docs/source/api_reference/utilities.rst
../config-tree/docs/source/tutorials/advanced_usage.rst
../config-tree/docs/source/tutorials/getting_started.rst
../config-tree/docs/source/tutorials/index.rst
../config-tree/docs/source/tutorials/layers_and_priority.rst
../config-tree/docs/source/tutorials/sources_and_metadata.rst
../config-tree/src/vivarium/config_tree/__init__.py
../config-tree/src/vivarium/config_tree/exceptions.py
../config-tree/src/vivarium/config_tree/main.py
../config-tree/src/vivarium/config_tree/py.typed
../config-tree/src/vivarium/config_tree/types.py
../config-tree/src/vivarium/config_tree/utilities.py
../config-tree/tests/__init__.py
../config-tree/tests/conftest.py
../config-tree/tests/test_data/mock_model_specification.yaml
../config-tree/tests/test_data/mock_model_specification.yml
../config-tree/tests/unit/test_basic_functionality.py
../config-tree/tests/unit/test_ingestion.py
../config-tree/tests/unit/test_package.py
../config-tree/tests/unit/test_removal_deadline.py
../dependencies/CHANGELOG.rst
../dependencies/LICENSE
../dependencies/Makefile
../dependencies/README.rst
../dependencies/pyproject.toml
../dependencies/python_versions.json
../dependencies/tests/test_package.py
../engine/.readthedocs.yaml
../engine/.zenodo.json
../engine/CHANGELOG.rst
../engine/Jenkinsfile
../engine/LICENSE
../engine/Makefile
../engine/README.rst
../engine/pyproject.toml
../engine/python_versions.json
../engine/docs/Makefile
../engine/docs/nitpick-exceptions
../engine/docs/source/conf.py
../engine/docs/source/glossary.rst
../engine/docs/source/index.rst
../engine/docs/source/installation.rst
../engine/docs/source/_static/boids.mp4
../engine/docs/source/_static/style.css
../engine/docs/source/api_reference/component.rst
../engine/docs/source/api_reference/exceptions.rst
../engine/docs/source/api_reference/index.rst
../engine/docs/source/api_reference/manager.rst
../engine/docs/source/api_reference/testing_utilities.rst
../engine/docs/source/api_reference/framework/configuration.rst
../engine/docs/source/api_reference/framework/engine.rst
../engine/docs/source/api_reference/framework/index.rst
../engine/docs/source/api_reference/framework/plugins.rst
../engine/docs/source/api_reference/framework/state_machine.rst
../engine/docs/source/api_reference/framework/utilities.rst
../engine/docs/source/api_reference/framework/artifact/index.rst
../engine/docs/source/api_reference/framework/artifact/interface.rst
../engine/docs/source/api_reference/framework/artifact/manager.rst
../engine/docs/source/api_reference/framework/components/index.rst
../engine/docs/source/api_reference/framework/components/interface.rst
../engine/docs/source/api_reference/framework/components/manager.rst
../engine/docs/source/api_reference/framework/components/parser.rst
../engine/docs/source/api_reference/framework/event/index.rst
../engine/docs/source/api_reference/framework/event/interface.rst
../engine/docs/source/api_reference/framework/event/manager.rst
../engine/docs/source/api_reference/framework/lifecycle/constraint_maker.rst
../engine/docs/source/api_reference/framework/lifecycle/entities.rst
../engine/docs/source/api_reference/framework/lifecycle/exceptions.rst
../engine/docs/source/api_reference/framework/lifecycle/index.rst
../engine/docs/source/api_reference/framework/lifecycle/interface.rst
../engine/docs/source/api_reference/framework/lifecycle/lifecycle_states.rst
../engine/docs/source/api_reference/framework/lifecycle/manager.rst
../engine/docs/source/api_reference/framework/logging/index.rst
../engine/docs/source/api_reference/framework/logging/interface.rst
../engine/docs/source/api_reference/framework/logging/manager.rst
../engine/docs/source/api_reference/framework/logging/utilities.rst
../engine/docs/source/api_reference/framework/lookup/index.rst
../engine/docs/source/api_reference/framework/lookup/interface.rst
../engine/docs/source/api_reference/framework/lookup/interpolation.rst
../engine/docs/source/api_reference/framework/lookup/manager.rst
../engine/docs/source/api_reference/framework/lookup/table.rst
../engine/docs/source/api_reference/framework/population/exceptions.rst
../engine/docs/source/api_reference/framework/population/index.rst
../engine/docs/source/api_reference/framework/population/interface.rst
../engine/docs/source/api_reference/framework/population/manager.rst
../engine/docs/source/api_reference/framework/population/population_view.rst
../engine/docs/source/api_reference/framework/population/utilities.rst
../engine/docs/source/api_reference/framework/randomness/exceptions.rst
../engine/docs/source/api_reference/framework/randomness/index.rst
../engine/docs/source/api_reference/framework/randomness/index_map.rst
../engine/docs/source/api_reference/framework/randomness/interface.rst
../engine/docs/source/api_reference/framework/randomness/manager.rst
../engine/docs/source/api_reference/framework/randomness/stream.rst
../engine/docs/source/api_reference/framework/resource/exceptions.rst
../engine/docs/source/api_reference/framework/resource/index.rst
../engine/docs/source/api_reference/framework/resource/interface.rst
../engine/docs/source/api_reference/framework/resource/manager.rst
../engine/docs/source/api_reference/framework/resource/resource.rst
../engine/docs/source/api_reference/framework/results/context.rst
../engine/docs/source/api_reference/framework/results/index.rst
../engine/docs/source/api_reference/framework/results/interface.rst
../engine/docs/source/api_reference/framework/results/manager.rst
../engine/docs/source/api_reference/framework/results/observation.rst
../engine/docs/source/api_reference/framework/results/observer.rst
../engine/docs/source/api_reference/framework/results/stratification.rst
../engine/docs/source/api_reference/framework/time/index.rst
../engine/docs/source/api_reference/framework/time/interface.rst
../engine/docs/source/api_reference/framework/time/manager.rst
../engine/docs/source/api_reference/framework/values/combiners.rst
../engine/docs/source/api_reference/framework/values/exceptions.rst
../engine/docs/source/api_reference/framework/values/index.rst
../engine/docs/source/api_reference/framework/values/interface.rst
../engine/docs/source/api_reference/framework/values/manager.rst
../engine/docs/source/api_reference/framework/values/pipeline.rst
../engine/docs/source/api_reference/framework/values/post_processors.rst
../engine/docs/source/api_reference/interface/cli.rst
../engine/docs/source/api_reference/interface/index.rst
../engine/docs/source/api_reference/interface/interactive.rst
../engine/docs/source/api_reference/interface/utilities.rst
../engine/docs/source/concepts/builder.rst
../engine/docs/source/concepts/components.rst
../engine/docs/source/concepts/configuration.rst
../engine/docs/source/concepts/crn.rst
../engine/docs/source/concepts/data.rst
../engine/docs/source/concepts/entry_points.rst
../engine/docs/source/concepts/event.rst
../engine/docs/source/concepts/index.rst
../engine/docs/source/concepts/interpolation.rst
../engine/docs/source/concepts/lifecycle.rst
../engine/docs/source/concepts/logging.rst
../engine/docs/source/concepts/lookup.rst
../engine/docs/source/concepts/population.rst
../engine/docs/source/concepts/resource.rst
../engine/docs/source/concepts/results.rst
../engine/docs/source/concepts/time.rst
../engine/docs/source/concepts/values.rst
../engine/docs/source/concepts/model_specification/index.rst
../engine/docs/source/concepts/model_specification/yaml_basics.rst
../engine/docs/source/images/crn_compare_cubes.jpg
../engine/docs/source/images/crn_cube.jpg
../engine/docs/source/images/crn_sim_alignment.jpg
../engine/docs/source/images/pipeline.jpg
../engine/docs/source/tutorials/boids.rst
../engine/docs/source/tutorials/disease_model.rst
../engine/docs/source/tutorials/exploration.rst
../engine/docs/source/tutorials/getting_started.rst
../engine/docs/source/tutorials/index.rst
../engine/docs/source/tutorials/running_a_simulation/cli.rst
../engine/docs/source/tutorials/running_a_simulation/index.rst
../engine/docs/source/tutorials/running_a_simulation/interactive.rst
../engine/src/vivarium/__init__.py
../engine/src/vivarium/engine/__init__.py
../engine/src/vivarium/engine/component.py
../engine/src/vivarium/engine/exceptions.py
../engine/src/vivarium/engine/manager.py
../engine/src/vivarium/engine/py.typed
../engine/src/vivarium/engine/testing_utilities.py
../engine/src/vivarium/engine/types.py
../engine/src/vivarium/engine/examples/__init__.py
../engine/src/vivarium/engine/examples/boids/__init__.py
../engine/src/vivarium/engine/examples/boids/forces.py
../engine/src/vivarium/engine/examples/boids/movement.py
../engine/src/vivarium/engine/examples/boids/neighbors.py
../engine/src/vivarium/engine/examples/boids/population.py
../engine/src/vivarium/engine/examples/boids/visualization.py
../engine/src/vivarium/engine/examples/disease_model/__init__.py
../engine/src/vivarium/engine/examples/disease_model/disease.py
../engine/src/vivarium/engine/examples/disease_model/disease_model.yaml
../engine/src/vivarium/engine/examples/disease_model/intervention.py
../engine/src/vivarium/engine/examples/disease_model/mortality.py
../engine/src/vivarium/engine/examples/disease_model/observer.py
../engine/src/vivarium/engine/examples/disease_model/population.py
../engine/src/vivarium/engine/examples/disease_model/risk.py
../engine/src/vivarium/engine/framework/__init__.py
../engine/src/vivarium/engine/framework/configuration.py
../engine/src/vivarium/engine/framework/engine.py
../engine/src/vivarium/engine/framework/plugins.py
../engine/src/vivarium/engine/framework/state_machine.py
../engine/src/vivarium/engine/framework/utilities.py
../engine/src/vivarium/engine/framework/artifact/__init__.py
../engine/src/vivarium/engine/framework/artifact/interface.py
../engine/src/vivarium/engine/framework/artifact/manager.py
../engine/src/vivarium/engine/framework/components/__init__.py
../engine/src/vivarium/engine/framework/components/interface.py
../engine/src/vivarium/engine/framework/components/manager.py
../engine/src/vivarium/engine/framework/components/parser.py
../engine/src/vivarium/engine/framework/event/__init__.py
../engine/src/vivarium/engine/framework/event/interface.py
../engine/src/vivarium/engine/framework/event/manager.py
../engine/src/vivarium/engine/framework/lifecycle/__init__.py
../engine/src/vivarium/engine/framework/lifecycle/constraint_maker.py
../engine/src/vivarium/engine/framework/lifecycle/entities.py
../engine/src/vivarium/engine/framework/lifecycle/exceptions.py
../engine/src/vivarium/engine/framework/lifecycle/interface.py
../engine/src/vivarium/engine/framework/lifecycle/lifecycle_states.py
../engine/src/vivarium/engine/framework/lifecycle/manager.py
../engine/src/vivarium/engine/framework/logging/__init__.py
../engine/src/vivarium/engine/framework/logging/interface.py
../engine/src/vivarium/engine/framework/logging/manager.py
../engine/src/vivarium/engine/framework/logging/utilities.py
../engine/src/vivarium/engine/framework/lookup/__init__.py
../engine/src/vivarium/engine/framework/lookup/interface.py
../engine/src/vivarium/engine/framework/lookup/interpolation.py
../engine/src/vivarium/engine/framework/lookup/manager.py
../engine/src/vivarium/engine/framework/lookup/table.py
../engine/src/vivarium/engine/framework/population/__init__.py
../engine/src/vivarium/engine/framework/population/exceptions.py
../engine/src/vivarium/engine/framework/population/interface.py
../engine/src/vivarium/engine/framework/population/manager.py
../engine/src/vivarium/engine/framework/population/population_view.py
../engine/src/vivarium/engine/framework/population/utilities.py
../engine/src/vivarium/engine/framework/randomness/__init__.py
../engine/src/vivarium/engine/framework/randomness/exceptions.py
../engine/src/vivarium/engine/framework/randomness/index_map.py
../engine/src/vivarium/engine/framework/randomness/interface.py
../engine/src/vivarium/engine/framework/randomness/manager.py
../engine/src/vivarium/engine/framework/randomness/stream.py
../engine/src/vivarium/engine/framework/resource/__init__.py
../engine/src/vivarium/engine/framework/resource/exceptions.py
../engine/src/vivarium/engine/framework/resource/interface.py
../engine/src/vivarium/engine/framework/resource/manager.py
../engine/src/vivarium/engine/framework/resource/resource.py
../engine/src/vivarium/engine/framework/results/__init__.py
../engine/src/vivarium/engine/framework/results/context.py
../engine/src/vivarium/engine/framework/results/exceptions.py
../engine/src/vivarium/engine/framework/results/interface.py
../engine/src/vivarium/engine/framework/results/manager.py
../engine/src/vivarium/engine/framework/results/observation.py
../engine/src/vivarium/engine/framework/results/observer.py
../engine/src/vivarium/engine/framework/results/stratification.py
../engine/src/vivarium/engine/framework/time/__init__.py
../engine/src/vivarium/engine/framework/time/interface.py
../engine/src/vivarium/engine/framework/time/manager.py
../engine/src/vivarium/engine/framework/values/__init__.py
../engine/src/vivarium/engine/framework/values/combiners.py
../engine/src/vivarium/engine/framework/values/exceptions.py
../engine/src/vivarium/engine/framework/values/interface.py
../engine/src/vivarium/engine/framework/values/manager.py
../engine/src/vivarium/engine/framework/values/pipeline.py
../engine/src/vivarium/engine/framework/values/post_processors.py
../engine/src/vivarium/engine/interface/__init__.py
../engine/src/vivarium/engine/interface/cli.py
../engine/src/vivarium/engine/interface/cli_tools.py
../engine/src/vivarium/engine/interface/interactive.py
../engine/src/vivarium/engine/interface/utilities.py
../engine/tests/__init__.py
../engine/tests/conftest.py
../engine/tests/helpers.py
../engine/tests/test_package.py
../engine/tests/examples/__init__.py
../engine/tests/examples/test_boids_model.py
../engine/tests/examples/test_disease_model.py
../engine/tests/framework/__init__.py
../engine/tests/framework/test_configuration.py
../engine/tests/framework/test_engine.py
../engine/tests/framework/test_event.py
../engine/tests/framework/test_lifecycle.py
../engine/tests/framework/test_logging.py
../engine/tests/framework/test_plugins.py
../engine/tests/framework/test_state_machine.py
../engine/tests/framework/test_time.py
../engine/tests/framework/test_utilities.py
../engine/tests/framework/test_values.py
../engine/tests/framework/artifact/test_manager.py
../engine/tests/framework/components/__init__.py
../engine/tests/framework/components/test_component.py
../engine/tests/framework/components/test_manager.py
../engine/tests/framework/components/test_parser.py
../engine/tests/framework/lookup/__init__.py
../engine/tests/framework/lookup/test_interpolation.py
../engine/tests/framework/lookup/test_lookup.py
../engine/tests/framework/population/__init__.py
../engine/tests/framework/population/conftest.py
../engine/tests/framework/population/helpers.py
../engine/tests/framework/population/test_manager.py
../engine/tests/framework/population/test_population_view.py
../engine/tests/framework/population/test_utilities.py
../engine/tests/framework/randomness/__init__.py
../engine/tests/framework/randomness/conftest.py
../engine/tests/framework/randomness/test_crn.py
../engine/tests/framework/randomness/test_index_map.py
../engine/tests/framework/randomness/test_manager.py
../engine/tests/framework/randomness/test_reproducibility.py
../engine/tests/framework/randomness/test_stream.py
../engine/tests/framework/resource/__init__.py
../engine/tests/framework/resource/test_interface.py
../engine/tests/framework/resource/test_manager.py
../engine/tests/framework/resource/test_resource.py
../engine/tests/framework/results/__init__.py
../engine/tests/framework/results/helpers.py
../engine/tests/framework/results/test_context.py
../engine/tests/framework/results/test_interface.py
../engine/tests/framework/results/test_manager.py
../engine/tests/framework/results/test_observation.py
../engine/tests/framework/results/test_observer.py
../engine/tests/framework/results/test_stratification.py
../engine/tests/interface/__init__.py
../engine/tests/interface/test_cli.py
../engine/tests/interface/test_interactive.py
../engine/tests/interface/test_utilities.py
../engine/tests/test_data/bad_model_specification.txt
../engine/tests/test_data/mock_model_specification.yaml
../engine/tests/test_data/mock_model_specification.yml
../engine/tests/test_data/mock_user_config.yaml
../engine/tests/test_data/mock_user_config.yml
../gbd-mapping/.readthedocs.yaml
../gbd-mapping/CHANGELOG.rst
../gbd-mapping/Jenkinsfile
../gbd-mapping/LICENSE
../gbd-mapping/Makefile
../gbd-mapping/README.rst
../gbd-mapping/pyproject.toml
../gbd-mapping/python_versions.json
../gbd-mapping/docs/Makefile
../gbd-mapping/docs/nitpick-exceptions
../gbd-mapping/docs/source/conf.py
../gbd-mapping/docs/source/gbd_mapping.rst
../gbd-mapping/docs/source/gbd_mapping_generator.rst
../gbd-mapping/docs/source/index.rst
../gbd-mapping/docs/source/modules.rst
../gbd-mapping/docs/source/_static/style.css
../gbd-mapping/src/vivarium/gbd_mapping/__init__.py
../gbd-mapping/src/vivarium/gbd_mapping/base_template.py
../gbd-mapping/src/vivarium/gbd_mapping/cause.py
../gbd-mapping/src/vivarium/gbd_mapping/cause_template.py
../gbd-mapping/src/vivarium/gbd_mapping/covariate.py
../gbd-mapping/src/vivarium/gbd_mapping/covariate_template.py
../gbd-mapping/src/vivarium/gbd_mapping/etiology.py
../gbd-mapping/src/vivarium/gbd_mapping/etiology_template.py
../gbd-mapping/src/vivarium/gbd_mapping/id.py
../gbd-mapping/src/vivarium/gbd_mapping/risk_factor.py
../gbd-mapping/src/vivarium/gbd_mapping/risk_factor_template.py
../gbd-mapping/src/vivarium/gbd_mapping/sequela.py
../gbd-mapping/src/vivarium/gbd_mapping/sequela_template.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/__init__.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/base_template_builder.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/build_mapping.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/cause_builder.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/covariate_builder.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/data.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/etiology_builder.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/globals.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/id_builder.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/risk_builder.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/sequela_builder.py
../gbd-mapping/src/vivarium/gbd_mapping_generator/util.py
../gbd-mapping/tests/test_base_template.py
../gbd-mapping/tests/test_gbd_mapping_generator.py
../gbd-mapping/tests/test_package.py
../profiling/CHANGELOG.rst
../profiling/Jenkinsfile
../profiling/LICENSE
../profiling/Makefile
../profiling/README.rst
../profiling/extraction_config_example.yaml
../profiling/pyproject.toml
../profiling/python_versions.json
../profiling/src/vivarium/profiling/__init__.py
../profiling/src/vivarium/profiling/utilities.py
../profiling/src/vivarium/profiling/components/__init__.py
../profiling/src/vivarium/profiling/components/risks/effect.py
../profiling/src/vivarium/profiling/constants/__init__.py
../profiling/src/vivarium/profiling/constants/data_keys.py
../profiling/src/vivarium/profiling/constants/data_values.py
../profiling/src/vivarium/profiling/constants/metadata.py
../profiling/src/vivarium/profiling/constants/models.py
../profiling/src/vivarium/profiling/constants/paths.py
../profiling/src/vivarium/profiling/constants/scenarios.py
../profiling/src/vivarium/profiling/data/__init__.py
../profiling/src/vivarium/profiling/data/builder.py
../profiling/src/vivarium/profiling/data/loader.py
../profiling/src/vivarium/profiling/model_specifications/model_spec_scaling.yaml
../profiling/src/vivarium/profiling/model_specifications/branches/scenarios.yaml
../profiling/src/vivarium/profiling/plugins/artifact.py
../profiling/src/vivarium/profiling/plugins/parser.py
../profiling/src/vivarium/profiling/templates/__init__.py
../profiling/src/vivarium/profiling/templates/analysis_template.ipynb
../profiling/src/vivarium/profiling/tools/__init__.py
../profiling/src/vivarium/profiling/tools/app_logging.py
../profiling/src/vivarium/profiling/tools/cli.py
../profiling/src/vivarium/profiling/tools/extraction.py
../profiling/src/vivarium/profiling/tools/make_artifacts.py
../profiling/src/vivarium/profiling/tools/notebook_generator.py
../profiling/src/vivarium/profiling/tools/plotting.py
../profiling/src/vivarium/profiling/tools/run_benchmark.py
../profiling/src/vivarium/profiling/tools/run_profile.py
../profiling/src/vivarium/profiling/tools/summarize.py
../profiling/tests/__init__.py
../profiling/tests/conftest.py
../profiling/tests/test_cli.py
../profiling/tests/test_extraction.py
../profiling/tests/test_package.py
../profiling/tests/test_run_benchmark.py
../profiling/tests/test_run_profile.py
../profiling/tests/test_sample.py
../profiling/tests/test_summarize.py
../profiling/tests/plugins/test_parser.py
../public-health/.readthedocs.yaml
../public-health/.zenodo.json
../public-health/CHANGELOG.rst
../public-health/Jenkinsfile
../public-health/LICENSE
../public-health/Makefile
../public-health/README.rst
../public-health/pyproject.toml
../public-health/python_versions.json
../public-health/docs/Makefile
../public-health/docs/nitpick-exceptions
../public-health/docs/source/conf.py
../public-health/docs/source/glossary.rst
../public-health/docs/source/index.rst
../public-health/docs/source/_static/style.css
../public-health/docs/source/_templates/layout.html
../public-health/docs/source/api_reference/index.rst
../public-health/docs/source/api_reference/utilities.rst
../public-health/docs/source/api_reference/causal_factor/calibration_constant.rst
../public-health/docs/source/api_reference/causal_factor/distributions.rst
../public-health/docs/source/api_reference/causal_factor/effect.rst
../public-health/docs/source/api_reference/causal_factor/exposure.rst
../public-health/docs/source/api_reference/causal_factor/index.rst
../public-health/docs/source/api_reference/causal_factor/utilities.rst
../public-health/docs/source/api_reference/disease/exceptions.rst
../public-health/docs/source/api_reference/disease/index.rst
../public-health/docs/source/api_reference/disease/model.rst
../public-health/docs/source/api_reference/disease/models.rst
../public-health/docs/source/api_reference/disease/special_disease.rst
../public-health/docs/source/api_reference/disease/state.rst
../public-health/docs/source/api_reference/disease/transition.rst
../public-health/docs/source/api_reference/plugins/index.rst
../public-health/docs/source/api_reference/plugins/parser.rst
../public-health/docs/source/api_reference/population/add_new_birth_cohorts.rst
../public-health/docs/source/api_reference/population/base_population.rst
../public-health/docs/source/api_reference/population/data_transformations.rst
../public-health/docs/source/api_reference/population/index.rst
../public-health/docs/source/api_reference/population/mortality.rst
../public-health/docs/source/api_reference/results/disability.rst
../public-health/docs/source/api_reference/results/disease.rst
../public-health/docs/source/api_reference/results/index.rst
../public-health/docs/source/api_reference/results/mortality.rst
../public-health/docs/source/api_reference/results/observer.rst
../public-health/docs/source/api_reference/results/risk.rst
../public-health/docs/source/api_reference/results/simple_cause.rst
../public-health/docs/source/api_reference/results/stratification.rst
../public-health/docs/source/api_reference/risks/base_risk.rst
../public-health/docs/source/api_reference/risks/effect.rst
../public-health/docs/source/api_reference/risks/index.rst
../public-health/docs/source/api_reference/risks/implementations/index.rst
../public-health/docs/source/api_reference/risks/implementations/low_birth_weight_and_short_gestation.rst
../public-health/docs/source/api_reference/treatment/index.rst
../public-health/docs/source/api_reference/treatment/intervention.rst
../public-health/docs/source/api_reference/treatment/magic_wand.rst
../public-health/docs/source/api_reference/treatment/scale_up.rst
../public-health/docs/source/api_reference/treatment/therapeutic_inertia.rst
../public-health/docs/source/concepts/index.rst
../public-health/docs/source/concepts/disease/index.rst
../public-health/docs/source/concepts/disease/model.rst
../public-health/docs/source/concepts/disease/risk_attributable_disease.rst
../public-health/docs/source/concepts/population/base_population.rst
../public-health/docs/source/concepts/population/fertility.rst
../public-health/docs/source/concepts/population/index.rst
../public-health/docs/source/concepts/population/mortality.rst
../public-health/docs/source/concepts/results/index.rst
../public-health/docs/source/concepts/results/public_health_observer.rst
../public-health/docs/source/concepts/results/stratification.rst
../public-health/docs/source/concepts/risk/calibration_constant.rst
../public-health/docs/source/concepts/risk/distributions.rst
../public-health/docs/source/concepts/risk/exposure.rst
../public-health/docs/source/concepts/risk/index.rst
../public-health/docs/source/concepts/risk/relative_risk.rst
../public-health/docs/source/concepts/treatment/index.rst
../public-health/docs/source/concepts/treatment/scale_up.rst
../public-health/docs/source/concepts/treatment/therapeutic_inertia.rst
../public-health/docs/source/tutorials/disease.rst
../public-health/docs/source/tutorials/index.rst
../public-health/docs/source/tutorials/non_standard_risk.rst
../public-health/docs/source/tutorials/observers.rst
../public-health/docs/source/tutorials/population.rst
../public-health/docs/source/tutorials/risk.rst
../public-health/docs/source/tutorials/risk_effect.rst
../public-health/docs/source/tutorials/treatment.rst
../public-health/src/vivarium/public_health/__init__.py
../public-health/src/vivarium/public_health/_example_data.py
../public-health/src/vivarium/public_health/utilities.py
../public-health/src/vivarium/public_health/causal_factor/__init__.py
../public-health/src/vivarium/public_health/causal_factor/calibration_constant.py
../public-health/src/vivarium/public_health/causal_factor/distributions.py
../public-health/src/vivarium/public_health/causal_factor/effect.py
../public-health/src/vivarium/public_health/causal_factor/exposure.py
../public-health/src/vivarium/public_health/causal_factor/utilities.py
../public-health/src/vivarium/public_health/disease/__init__.py
../public-health/src/vivarium/public_health/disease/exceptions.py
../public-health/src/vivarium/public_health/disease/model.py
../public-health/src/vivarium/public_health/disease/models.py
../public-health/src/vivarium/public_health/disease/special_disease.py
../public-health/src/vivarium/public_health/disease/state.py
../public-health/src/vivarium/public_health/disease/transition.py
../public-health/src/vivarium/public_health/plugins/__init__.py
../public-health/src/vivarium/public_health/plugins/parser.py
../public-health/src/vivarium/public_health/population/__init__.py
../public-health/src/vivarium/public_health/population/add_new_birth_cohorts.py
../public-health/src/vivarium/public_health/population/base_population.py
../public-health/src/vivarium/public_health/population/data_transformations.py
../public-health/src/vivarium/public_health/population/mortality.py
../public-health/src/vivarium/public_health/results/__init__.py
../public-health/src/vivarium/public_health/results/causal_factor.py
../public-health/src/vivarium/public_health/results/columns.py
../public-health/src/vivarium/public_health/results/disability.py
../public-health/src/vivarium/public_health/results/disease.py
../public-health/src/vivarium/public_health/results/mortality.py
../public-health/src/vivarium/public_health/results/observer.py
../public-health/src/vivarium/public_health/results/simple_cause.py
../public-health/src/vivarium/public_health/results/stratification.py
../public-health/src/vivarium/public_health/risks/__init__.py
../public-health/src/vivarium/public_health/risks/base_risk.py
../public-health/src/vivarium/public_health/risks/effect.py
../public-health/src/vivarium/public_health/risks/implementations/__init__.py
../public-health/src/vivarium/public_health/risks/implementations/low_birth_weight_and_short_gestation.py
../public-health/src/vivarium/public_health/treatment/__init__.py
../public-health/src/vivarium/public_health/treatment/intervention.py
../public-health/src/vivarium/public_health/treatment/magic_wand.py
../public-health/src/vivarium/public_health/treatment/scale_up.py
../public-health/src/vivarium/public_health/treatment/therapeutic_inertia.py
../public-health/tests/__init__.py
../public-health/tests/conftest.py
../public-health/tests/mock_artifact.py
../public-health/tests/test_package.py
../public-health/tests/test_utilities.py
../public-health/tests/causal_factor/__init__.py
../public-health/tests/causal_factor/test_calibration_constant.py
../public-health/tests/data/rr_interpolator.csv
../public-health/tests/disease/__init__.py
../public-health/tests/disease/test_disease.py
../public-health/tests/disease/test_special_disease.py
../public-health/tests/plugins/__init__.py
../public-health/tests/plugins/test_parser.py
../public-health/tests/population/__init__.py
../public-health/tests/population/conftest.py
../public-health/tests/population/test_add_new_birth_cohort.py
../public-health/tests/population/test_base_population.py
../public-health/tests/population/test_data_transformations.py
../public-health/tests/population/test_mortality.py
../public-health/tests/results/__init__.py
../public-health/tests/results/test_categorical_risk_observer.py
../public-health/tests/results/test_disability.py
../public-health/tests/results/test_disability_observer.py
../public-health/tests/results/test_disease_observer.py
../public-health/tests/results/test_mortality_observer.py
../public-health/tests/results/test_stratification.py
../public-health/tests/risks/__init__.py
../public-health/tests/risks/conftest.py
../public-health/tests/risks/test_base_risk.py
../public-health/tests/risks/test_distributions.py
../public-health/tests/risks/test_effect.py
../public-health/tests/risks/test_low_birth_weight_and_short_gestation.py
../public-health/tests/treatment/__init__.py
../public-health/tests/treatment/test_intervention.py
../public-health/tests/treatment/test_scale_up.py
../risk-distributions/.readthedocs.yaml
../risk-distributions/CHANGELOG.rst
../risk-distributions/Jenkinsfile
../risk-distributions/LICENSE
../risk-distributions/Makefile
../risk-distributions/README.rst
../risk-distributions/pyproject.toml
../risk-distributions/python_versions.json
../risk-distributions/docs/Makefile
../risk-distributions/docs/nitpick-exceptions
../risk-distributions/docs/source/conf.py
../risk-distributions/docs/source/index.rst
../risk-distributions/docs/source/_static/style.css
../risk-distributions/docs/source/api_reference/index.rst
../risk-distributions/docs/source/api_reference/risk_distributions.rst
../risk-distributions/docs/source/tutorials/index.rst
../risk-distributions/src/vivarium/risk_distributions/__init__.py
../risk-distributions/src/vivarium/risk_distributions/formatting.py
../risk-distributions/src/vivarium/risk_distributions/py.typed
../risk-distributions/src/vivarium/risk_distributions/risk_distributions.py
../risk-distributions/tests/conftest.py
../risk-distributions/tests/test_ensemble_distribution.py
../risk-distributions/tests/test_formatting.py
../risk-distributions/tests/test_package.py
../risk-distributions/tests/test_risk_distributions.py
docs/Makefile
docs/nitpick-exceptions
docs/source/conf.py
docs/source/index.rst
docs/source/_static/.gitkeep
docs/source/automated_v_and_v/PPV,_NPV,_Sensitivity_and_Specificity.svg
docs/source/automated_v_and_v/index.rst
src/vivarium/testing_utils/__init__.py
src/vivarium/testing_utils/fuzzy_checker.py
src/vivarium/testing_utils/py.typed
src/vivarium/testing_utils/pytest_plugin.py
src/vivarium/testing_utils/automated_validation/__init__.py
src/vivarium/testing_utils/automated_validation/bundle.py
src/vivarium/testing_utils/automated_validation/comparison.py
src/vivarium/testing_utils/automated_validation/constants.py
src/vivarium/testing_utils/automated_validation/data_loader.py
src/vivarium/testing_utils/automated_validation/interface.py
src/vivarium/testing_utils/automated_validation/results.py
src/vivarium/testing_utils/automated_validation/data_transformation/age_groups.py
src/vivarium/testing_utils/automated_validation/data_transformation/calculations.py
src/vivarium/testing_utils/automated_validation/data_transformation/data_schema.py
src/vivarium/testing_utils/automated_validation/data_transformation/formatting.py
src/vivarium/testing_utils/automated_validation/data_transformation/measures.py
src/vivarium/testing_utils/automated_validation/data_transformation/rate_aggregation.py
src/vivarium/testing_utils/automated_validation/data_transformation/report.py
src/vivarium/testing_utils/automated_validation/data_transformation/utils.py
src/vivarium/testing_utils/automated_validation/templates/report_template.html
src/vivarium/testing_utils/automated_validation/visualization/dataframe_utils.py
src/vivarium/testing_utils/automated_validation/visualization/plot_utils.py
src/vivarium_testing_utils.egg-info/PKG-INFO
src/vivarium_testing_utils.egg-info/SOURCES.txt
src/vivarium_testing_utils.egg-info/dependency_links.txt
src/vivarium_testing_utils.egg-info/entry_points.txt
src/vivarium_testing_utils.egg-info/requires.txt
src/vivarium_testing_utils.egg-info/scm_file_list.json
src/vivarium_testing_utils.egg-info/scm_version.json
src/vivarium_testing_utils.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_fuzzy_checker.py
tests/test_package.py
tests/test_pytest_plugin.py
tests/automated_validation/conftest.py
tests/automated_validation/test_comparison.py
tests/automated_validation/test_data_bundle.py
tests/automated_validation/test_data_loader.py
tests/automated_validation/test_interface.py
tests/automated_validation/data_transformation/test_age_groups.py
tests/automated_validation/data_transformation/test_calculations.py
tests/automated_validation/data_transformation/test_data_schema.py
tests/automated_validation/data_transformation/test_formatting.py
tests/automated_validation/data_transformation/test_measures.py
tests/automated_validation/gbd_data/exposure.csv
tests/automated_validation/gbd_data/incidence.csv
tests/automated_validation/gbd_data/population_structure.csv
tests/automated_validation/gbd_data/relative_risks.csv
tests/automated_validation/gbd_data/remission_rate.csv
tests/automated_validation/visualization/test_dataframe_utils.py
tests/automated_validation/visualization/test_plot_utils.py