Package csb :: Package bio :: Package io :: Module clans
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Module clans

source code

Classes for parsing/manipulating/writing CLANS (by Tancred Frickey) files

Author: Klaus Kopec MPI fuer Entwicklungsbiologie, Tuebingen

Classes
  Clans
Class for holding and manipulating data from one CLANS file.
  ClansEntry
Class holding the data of one CLANS sequence entry.
  ClansEntryCollection
Read-only container for holding (and internally managing) ClansEntry instances.
  ClansEntryGiComparator
Comparator for two ClansEntrys.
  ClansFileBuilder
Base abstract files for building a file in CLANS format.
  ClansFileWriter
Class for serializing a Clans instance to a file in CLANS format.
  ClansParams
Class for handling Clans parameters.
  ClansParser
CLANS file format aware parser.
  ClansSeqgroup
Class holding the data of one CLANS group (seqgroup).
  ClansSeqgroupCollection
Read-only container for holding (and internally managing) ClansSeqgroup instances.
  Color
RGB color handling class.
  MissingBlockError
Raised if an expected tag is not found during parsing of a CLANS file.
  UnknownTagError
Raised if an unknown tag is encountered while parsing a CLANS file.
Variables
  __package__ = 'csb.bio.io'