mriqc
0.8
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  • Contents
  • MRIQC measures
  • Run mriqc with docker
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mriqc package¶

Subpackages¶

  • mriqc.interfaces package
    • Submodules
    • mriqc.interfaces.qc module
    • mriqc.interfaces.viz module
    • mriqc.interfaces.viz_utils module
    • Module contents
  • mriqc.qc package
    • Module contents
    • Submodules
    • mriqc.qc.anatomical module
    • mriqc.qc.functional module
  • The MRIQC Reports
    • Structural images (sMRI)
      • For the individual scan reports:
      • For the group reports:
    • Functional images (fMRI)
  • mriqc.reports package
    • Submodules
    • mriqc.reports.generators module
    • mriqc.reports.utils module
    • Module contents
  • mriqc.utils package
    • Submodules
    • mriqc.utils.misc module
    • Module contents
  • mriqc.workflows package
    • Submodules
    • mriqc.workflows.anatomical module
    • mriqc.workflows.core module
    • mriqc.workflows.functional module
    • mriqc.workflows.utils module
    • Module contents

Submodules¶

mriqc.run_mriqc module¶

MRIQC¶

mriqc.run_mriqc.main()¶

Entry point

Module contents¶

The mriqc package provides a series of NR, IQMs to used in QAPs for MRI.

Dependencies¶

Make sure you have FSL and AFNI installed, and the binaries available in the system’s $PATH.

Installation¶

The easiest path is using pypi

pip install mriqc

Example¶

mriqc bids_dataset/ output_folder/ participant

© Copyright 2016, Oscar Esteban.

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