mriqc
0.8
User Guide
Contents
MRIQC measures
Run mriqc with docker
mriqc
Docs
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Index
A
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B
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C
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E
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F
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G
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H
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I
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M
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O
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P
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R
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S
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V
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W
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Z
A
airmsk_wf() (in module mriqc.workflows.anatomical)
anat_qc_workflow() (in module mriqc.workflows.anatomical)
art_qi1() (in module mriqc.qc.anatomical)
art_qi2() (in module mriqc.qc.anatomical)
B
bids_getfile() (in module mriqc.utils.misc)
bids_path() (in module mriqc.utils.misc)
bids_scan_file_walker() (in module mriqc.utils.misc)
C
cjv() (in module mriqc.qc.anatomical)
cnr() (in module mriqc.qc.anatomical)
combine_masks() (in module mriqc.workflows.anatomical)
compile() (mriqc.reports.generators.ConfigGen method)
compute_dvars() (in module mriqc.qc.functional)
concat_pdf() (in module mriqc.reports.generators)
ConfigGen (class in mriqc.reports.generators)
E
efc() (in module mriqc.qc.anatomical)
F
fber() (in module mriqc.qc.anatomical)
fd_jenkinson() (in module mriqc.workflows.utils)
find_failed() (in module mriqc.reports.utils)
fmri_bmsk_workflow() (in module mriqc.workflows.functional)
fmri_getidx() (in module mriqc.workflows.utils)
fmri_qc_workflow() (in module mriqc.workflows.functional)
FunctionalQC (class in mriqc.interfaces.qc)
FunctionalQCInputSpec (class in mriqc.interfaces.qc)
FunctionalQCOutputSpec (class in mriqc.interfaces.qc)
fwhm_dict() (in module mriqc.workflows.utils)
G
gather_bids_data() (in module mriqc.utils.misc)
gcor() (in module mriqc.qc.functional)
generate_conf() (mriqc.reports.generators.ConfigGen method)
generate_csv() (in module mriqc.reports.generators)
gradient_threshold() (in module mriqc.workflows.anatomical)
gsr() (in module mriqc.qc.functional)
H
headmsk_wf() (in module mriqc.workflows.anatomical)
hmc_afni() (in module mriqc.workflows.functional)
hmc_mcflirt() (in module mriqc.workflows.functional)
I
image_gradient() (in module mriqc.workflows.anatomical)
input_spec (mriqc.interfaces.qc.FunctionalQC attribute)
(mriqc.interfaces.qc.StructuralQC attribute)
(mriqc.interfaces.viz.PlotFD attribute)
(mriqc.interfaces.viz.PlotMosaic attribute)
(mriqc.interfaces.viz.Report attribute)
M
main() (in module mriqc.run_mriqc)
(in module setup)
mriqc (module)
mriqc.interfaces (module)
mriqc.interfaces.qc (module)
mriqc.interfaces.viz (module)
mriqc.interfaces.viz_utils (module)
mriqc.qc (module)
mriqc.qc.anatomical (module)
mriqc.qc.functional (module)
mriqc.reports (module)
mriqc.reports.generators (module)
mriqc.reports.utils (module)
mriqc.run_mriqc (module)
mriqc.utils (module)
mriqc.utils.misc (module)
mriqc.workflows (module)
mriqc.workflows.anatomical (module)
mriqc.workflows.core (module)
mriqc.workflows.functional (module)
mriqc.workflows.utils (module)
ms_anat() (in module mriqc.workflows.core)
ms_func() (in module mriqc.workflows.core)
O
output_spec (mriqc.interfaces.qc.FunctionalQC attribute)
(mriqc.interfaces.qc.StructuralQC attribute)
(mriqc.interfaces.viz.PlotFD attribute)
(mriqc.interfaces.viz.PlotMosaic attribute)
(mriqc.interfaces.viz.Report attribute)
P
plot_all() (in module mriqc.interfaces.viz_utils)
plot_dist() (in module mriqc.interfaces.viz_utils)
plot_fd() (in module mriqc.interfaces.viz_utils)
plot_measures() (in module mriqc.interfaces.viz_utils)
plot_mosaic() (in module mriqc.interfaces.viz_utils)
plot_vline() (in module mriqc.interfaces.viz_utils)
PlotFD (class in mriqc.interfaces.viz)
PlotFDInputSpec (class in mriqc.interfaces.viz)
PlotFDOutputSpec (class in mriqc.interfaces.viz)
PlotMosaic (class in mriqc.interfaces.viz)
PlotMosaicInputSpec (class in mriqc.interfaces.viz)
PlotMosaicOutputSpec (class in mriqc.interfaces.viz)
R
read_csv() (in module mriqc.reports.utils)
reorder_csv() (in module mriqc.utils.misc)
Report (class in mriqc.interfaces.viz)
report_anatomical() (in module mriqc.reports.generators)
report_functional() (in module mriqc.reports.generators)
ReportInputSpec (class in mriqc.interfaces.viz)
ReportOutputSpec (class in mriqc.interfaces.viz)
rotate_files() (in module mriqc.utils.misc)
rpve() (in module mriqc.qc.anatomical)
S
setup (module)
snr() (in module mriqc.qc.anatomical)
StructuralQC (class in mriqc.interfaces.qc)
StructuralQCInputSpec (class in mriqc.interfaces.qc)
StructuralQCOutputSpec (class in mriqc.interfaces.qc)
summary_cover() (in module mriqc.reports.generators)
summary_fd() (in module mriqc.qc.functional)
summary_stats() (in module mriqc.qc.anatomical)
V
volume_fraction() (in module mriqc.qc.anatomical)
W
wm2max() (in module mriqc.qc.anatomical)
workflow_report() (in module mriqc.reports.generators)
Z
zero_variance() (in module mriqc.qc.functional)