Index

A | B | C | E | F | G | H | I | M | O | P | R | S | V | W | Z

A

airmsk_wf() (in module mriqc.workflows.anatomical)
anat_qc_workflow() (in module mriqc.workflows.anatomical)
art_qi1() (in module mriqc.qc.anatomical)
art_qi2() (in module mriqc.qc.anatomical)

B

bids_getfile() (in module mriqc.utils.misc)
bids_path() (in module mriqc.utils.misc)
bids_scan_file_walker() (in module mriqc.utils.misc)

C

cjv() (in module mriqc.qc.anatomical)
cnr() (in module mriqc.qc.anatomical)
combine_masks() (in module mriqc.workflows.anatomical)
compile() (mriqc.reports.generators.ConfigGen method)
compute_dvars() (in module mriqc.qc.functional)
concat_pdf() (in module mriqc.reports.generators)
ConfigGen (class in mriqc.reports.generators)

E

efc() (in module mriqc.qc.anatomical)

F

fber() (in module mriqc.qc.anatomical)
fd_jenkinson() (in module mriqc.workflows.utils)
find_failed() (in module mriqc.reports.utils)
fmri_bmsk_workflow() (in module mriqc.workflows.functional)
fmri_getidx() (in module mriqc.workflows.utils)
fmri_qc_workflow() (in module mriqc.workflows.functional)
FunctionalQC (class in mriqc.interfaces.qc)
FunctionalQCInputSpec (class in mriqc.interfaces.qc)
FunctionalQCOutputSpec (class in mriqc.interfaces.qc)
fwhm_dict() (in module mriqc.workflows.utils)

G

gather_bids_data() (in module mriqc.utils.misc)
gcor() (in module mriqc.qc.functional)
generate_conf() (mriqc.reports.generators.ConfigGen method)
generate_csv() (in module mriqc.reports.generators)
gradient_threshold() (in module mriqc.workflows.anatomical)
gsr() (in module mriqc.qc.functional)

H

headmsk_wf() (in module mriqc.workflows.anatomical)
hmc_afni() (in module mriqc.workflows.functional)
hmc_mcflirt() (in module mriqc.workflows.functional)

I

image_gradient() (in module mriqc.workflows.anatomical)
input_spec (mriqc.interfaces.qc.FunctionalQC attribute)
(mriqc.interfaces.qc.StructuralQC attribute)
(mriqc.interfaces.viz.PlotFD attribute)
(mriqc.interfaces.viz.PlotMosaic attribute)
(mriqc.interfaces.viz.Report attribute)

M

main() (in module mriqc.run_mriqc)
(in module setup)
mriqc (module)
mriqc.interfaces (module)
mriqc.interfaces.qc (module)
mriqc.interfaces.viz (module)
mriqc.interfaces.viz_utils (module)
mriqc.qc (module)
mriqc.qc.anatomical (module)
mriqc.qc.functional (module)
mriqc.reports (module)
mriqc.reports.generators (module)
mriqc.reports.utils (module)
mriqc.run_mriqc (module)
mriqc.utils (module)
mriqc.utils.misc (module)
mriqc.workflows (module)
mriqc.workflows.anatomical (module)
mriqc.workflows.core (module)
mriqc.workflows.functional (module)
mriqc.workflows.utils (module)
ms_anat() (in module mriqc.workflows.core)
ms_func() (in module mriqc.workflows.core)

O

output_spec (mriqc.interfaces.qc.FunctionalQC attribute)
(mriqc.interfaces.qc.StructuralQC attribute)
(mriqc.interfaces.viz.PlotFD attribute)
(mriqc.interfaces.viz.PlotMosaic attribute)
(mriqc.interfaces.viz.Report attribute)

P

plot_all() (in module mriqc.interfaces.viz_utils)
plot_dist() (in module mriqc.interfaces.viz_utils)
plot_fd() (in module mriqc.interfaces.viz_utils)
plot_measures() (in module mriqc.interfaces.viz_utils)
plot_mosaic() (in module mriqc.interfaces.viz_utils)
plot_vline() (in module mriqc.interfaces.viz_utils)
PlotFD (class in mriqc.interfaces.viz)
PlotFDInputSpec (class in mriqc.interfaces.viz)
PlotFDOutputSpec (class in mriqc.interfaces.viz)
PlotMosaic (class in mriqc.interfaces.viz)
PlotMosaicInputSpec (class in mriqc.interfaces.viz)
PlotMosaicOutputSpec (class in mriqc.interfaces.viz)

R

read_csv() (in module mriqc.reports.utils)
reorder_csv() (in module mriqc.utils.misc)
Report (class in mriqc.interfaces.viz)
report_anatomical() (in module mriqc.reports.generators)
report_functional() (in module mriqc.reports.generators)
ReportInputSpec (class in mriqc.interfaces.viz)
ReportOutputSpec (class in mriqc.interfaces.viz)
rotate_files() (in module mriqc.utils.misc)
rpve() (in module mriqc.qc.anatomical)

S

setup (module)
snr() (in module mriqc.qc.anatomical)
StructuralQC (class in mriqc.interfaces.qc)
StructuralQCInputSpec (class in mriqc.interfaces.qc)
StructuralQCOutputSpec (class in mriqc.interfaces.qc)
summary_cover() (in module mriqc.reports.generators)
summary_fd() (in module mriqc.qc.functional)
summary_stats() (in module mriqc.qc.anatomical)

V

volume_fraction() (in module mriqc.qc.anatomical)

W

wm2max() (in module mriqc.qc.anatomical)
workflow_report() (in module mriqc.reports.generators)

Z

zero_variance() (in module mriqc.qc.functional)