mriqc.interfaces package¶
Submodules¶
mriqc.interfaces.qc module¶
Nipype interfaces to quality control measures
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class
mriqc.interfaces.qc.
FunctionalQC
(**inputs)[source]¶ Bases:
nipype.interfaces.base.BaseInterface
Computes anatomical QC measures on the structural image given as input
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input_spec
¶ alias of
FunctionalQCInputSpec
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output_spec
¶ alias of
FunctionalQCOutputSpec
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class
mriqc.interfaces.qc.
FunctionalQCInputSpec
(**kwargs)[source]¶ Bases:
nipype.interfaces.base.BaseInterfaceInputSpec
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class
mriqc.interfaces.qc.
FunctionalQCOutputSpec
(**kwargs)[source]¶ Bases:
nipype.interfaces.base.TraitedSpec
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class
mriqc.interfaces.qc.
StructuralQC
(**inputs)[source]¶ Bases:
nipype.interfaces.base.BaseInterface
Computes anatomical QC measures on the structural image given as input
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input_spec
¶ alias of
StructuralQCInputSpec
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output_spec
¶ alias of
StructuralQCOutputSpec
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mriqc.interfaces.viz module¶
Visualization interfaces
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class
mriqc.interfaces.viz.
PlotFD
(from_file=None, **inputs)[source]¶ Bases:
nipype.interfaces.base.BaseInterface
Plots the frame displacement of a dataset
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input_spec
¶ alias of
PlotFDInputSpec
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output_spec
¶ alias of
PlotFDOutputSpec
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class
mriqc.interfaces.viz.
PlotFDInputSpec
(**kwargs)[source]¶ Bases:
nipype.interfaces.base.BaseInterfaceInputSpec
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class
mriqc.interfaces.viz.
PlotFDOutputSpec
(**kwargs)[source]¶ Bases:
nipype.interfaces.base.TraitedSpec
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class
mriqc.interfaces.viz.
PlotMosaic
(from_file=None, **inputs)[source]¶ Bases:
nipype.interfaces.base.BaseInterface
Plots slices of a 3D volume into a pdf file
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input_spec
¶ alias of
PlotMosaicInputSpec
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output_spec
¶ alias of
PlotMosaicOutputSpec
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class
mriqc.interfaces.viz.
PlotMosaicInputSpec
(**kwargs)[source]¶ Bases:
nipype.interfaces.base.BaseInterfaceInputSpec
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class
mriqc.interfaces.viz.
PlotMosaicOutputSpec
(**kwargs)[source]¶ Bases:
nipype.interfaces.base.TraitedSpec
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class
mriqc.interfaces.viz.
Report
(from_file=None, **inputs)[source]¶ Bases:
nipype.interfaces.base.BaseInterface
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input_spec
¶ alias of
ReportInputSpec
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output_spec
¶ alias of
ReportOutputSpec
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mriqc.interfaces.viz_utils module¶
Visualization utilities
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mriqc.interfaces.viz_utils.
plot_all
(df, groups, subject=None, figsize=(11.69, 5), strip_nsubj=10, title='Summary report')[source]¶
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mriqc.interfaces.viz_utils.
plot_dist
(main_file, mask_file, xlabel, distribution=None, xlabel2=None, figsize=(11.7, 8.3))[source]¶
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mriqc.interfaces.viz_utils.
plot_fd
(fd_file, fd_radius, title='FD plot', mean_fd_dist=None, figsize=(11.7, 8.3))[source]¶
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mriqc.interfaces.viz_utils.
plot_measures
(df, measures, ncols=4, title='Group level report', subject=None, figsize=(8.27, 11.69))[source]¶
Module contents¶
mriqc nipype interfaces