# Git files
.git
.gitignore

# Python/Environment
__pycache__
*.pyc
.ipynb_checkpoints
.venv
env/
venv/
*.egg-info/

# R/Studio
.Rproj.user
.Rhistory
.RData

# Large Data & Output
data/
output/
*.h5ad
*.csv
*.rds
*.pdf
*.png

# Docker internals
docker/
docker-compose.yml
Dockerfile*
