mriqc
0.9
  • Introduction
  • Installation
  • Running mriqc
  • Image Quality Metrics (IQMs)
  • Run mriqc with docker
  • The MRIQC classifier for T1w images
  • Visual reports
  • The MRIQC workflows
mriqc
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  • User Guide
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User GuideΒΆ

  • Installation
    • Execution system dependencies
  • Running mriqc
    • “Bare-metal” installation (Python 2/3)
    • Containerized versions
    • Running MRIQC on HPC clusters
      • Singularity containers
      • Requesting resources
  • Image Quality Metrics (IQMs)
    • IQMs for structural images
      • Measures based on noise measurements
      • Measures based on information theory
      • Measures targeting specific artifacts
      • Other measures
      • mriqc.qc.anatomical module
    • IQMs for functional images
      • Measures for the structural information
      • Measures for the temporal information
      • Measures for artifacts and other
      • mriqc.qc.functional module
  • Visual reports
    • Group reports
    • T1 and T2 -weighed images
      • Summary
      • Visual reports
      • Verbose reports
      • Metadata
    • BOLD images
      • Summary
      • Visual reports
      • Verbose reports
      • Metadata
    • mriqc.reports package
      • Submodules
  • The MRIQC workflows
    • The anatomical workflow
    • The functional workflow
  • The MRIQC classifier for T1w images
    • mriqc.classifier.cv – MRIQC Cross-validation Helpers
    • Data handler module

© Copyright 2017, Oscar Esteban.

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