mriqc
0.9
Introduction
Installation
Running mriqc
Image Quality Metrics (IQMs)
Run mriqc with docker
The MRIQC classifier for T1w images
Visual reports
The MRIQC workflows
mriqc
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User Guide
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User Guide
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Installation
Execution system dependencies
Running mriqc
“Bare-metal” installation (Python 2/3)
Containerized versions
Running MRIQC on HPC clusters
Singularity containers
Requesting resources
Image Quality Metrics (IQMs)
IQMs for structural images
Measures based on noise measurements
Measures based on information theory
Measures targeting specific artifacts
Other measures
mriqc.qc.anatomical module
IQMs for functional images
Measures for the structural information
Measures for the temporal information
Measures for artifacts and other
mriqc.qc.functional module
Visual reports
Group reports
T1 and T2 -weighed images
Summary
Visual reports
Verbose reports
Metadata
BOLD images
Summary
Visual reports
Verbose reports
Metadata
mriqc.reports package
Submodules
The MRIQC workflows
The anatomical workflow
The functional workflow
The MRIQC classifier for T1w images
mriqc.classifier.cv
– MRIQC Cross-validation Helpers
Data handler module