mriqc
0.9
  • Introduction
  • Installation
  • Running mriqc
  • Image Quality Metrics (IQMs)
  • Run mriqc with docker
  • The MRIQC classifier for T1w images
  • Visual reports
  • The MRIQC workflows
mriqc
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  • Welcome to mriqc’s documentation!
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Welcome to mriqc’s documentation!¶

MRIQC is developed by the Poldrack Lab at Stanford University for use at the Center for Reproducible Neuroscience (CRN), as well as for open-source software distribution.

Documentation Status https://api.codacy.com/project/badge/grade/fbb12f660141411a89ba1ae5bf873717 https://coveralls.io/repos/github/poldracklab/mriqc/badge.svg?branch=master Latest Version Supported Python versions Development Status License

Contents¶

  • Introduction
    • Support and communication
    • Authors
    • License information
  • Installation
    • Execution system dependencies
  • Running mriqc
    • “Bare-metal” installation (Python 2/3)
    • Containerized versions
    • Running MRIQC on HPC clusters
  • Image Quality Metrics (IQMs)
    • IQMs for structural images
    • IQMs for functional images
  • Run mriqc with docker
    • Preliminaries
    • Running mriqc
    • Explaining the mriqc-docker command line
  • The MRIQC classifier for T1w images
    • mriqc.classifier.cv – MRIQC Cross-validation Helpers
    • Data handler module
  • Visual reports
    • Group reports
    • T1 and T2 -weighed images
    • BOLD images
    • mriqc.reports package
  • The MRIQC workflows
    • The anatomical workflow
    • The functional workflow

Indices and tables¶

  • Index
  • Module Index
  • Search Page
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© Copyright 2017, Oscar Esteban.

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