mriqc
0.9
Introduction
Installation
Running mriqc
Image Quality Metrics (IQMs)
Run mriqc with docker
The MRIQC classifier for T1w images
Visual reports
The MRIQC workflows
mriqc
Docs
»
Index
A
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B
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C
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E
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F
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G
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H
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I
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L
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M
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N
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P
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R
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S
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U
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V
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W
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X
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Z
A
airmsk_wf() (in module mriqc.workflows.anatomical)
anat_flags() (in module mriqc.reports.utils)
anat_qc_workflow() (in module mriqc.workflows.anatomical)
art_qi1() (in module mriqc.qc.anatomical)
art_qi2() (in module mriqc.qc.anatomical)
B
best_clf (mriqc.classifier.cv.NestedCVHelper attribute)
best_model (mriqc.classifier.cv.NestedCVHelper attribute)
C
cjv() (in module mriqc.qc.anatomical)
cnr() (in module mriqc.qc.anatomical)
compute_iqms() (in module mriqc.workflows.anatomical)
(in module mriqc.workflows.functional)
cv_inner (mriqc.classifier.cv.NestedCVHelper attribute)
cv_outer (mriqc.classifier.cv.NestedCVHelper attribute)
cv_scores_df (mriqc.classifier.cv.NestedCVHelper attribute)
CVHelper (class in mriqc.classifier.cv)
CVHelperBase (class in mriqc.classifier.cv)
E
efc() (in module mriqc.qc.anatomical)
epi_mni_align() (in module mriqc.workflows.functional)
estimator (mriqc.classifier.cv.CVHelper attribute)
evaluate() (mriqc.classifier.cv.CVHelper method)
F
fber() (in module mriqc.qc.anatomical)
fit() (mriqc.classifier.cv.CVHelper method)
(mriqc.classifier.cv.CVHelperBase method)
(mriqc.classifier.cv.NestedCVHelper method)
(mriqc.classifier.sklearn_extension.ModelAndGridSearchCV method)
fmri_bmsk_workflow() (in module mriqc.workflows.functional)
fmri_qc_workflow() (in module mriqc.workflows.functional)
ftnames (mriqc.classifier.cv.CVHelperBase attribute)
G
gcor() (in module mriqc.qc.functional)
gen_html() (in module mriqc.reports.group)
get_groups() (mriqc.classifier.cv.CVHelperBase method)
get_inner_cv_scores() (mriqc.classifier.cv.NestedCVHelper method)
get_outer_cv_scores() (mriqc.classifier.cv.NestedCVHelper method)
gradient_threshold() (in module mriqc.workflows.anatomical)
gsr() (in module mriqc.qc.functional)
H
headmsk_wf() (in module mriqc.workflows.anatomical)
hmc_afni() (in module mriqc.workflows.functional)
hmc_mcflirt() (in module mriqc.workflows.functional)
I
image_gradient() (in module mriqc.workflows.anatomical)
individual_html() (in module mriqc.reports.individual)
individual_reports() (in module mriqc.workflows.anatomical)
(in module mriqc.workflows.functional)
iqms2html() (in module mriqc.reports.utils)
L
load() (mriqc.classifier.cv.CVHelper method)
M
ModelAndGridSearchCV (class in mriqc.classifier.sklearn_extension)
ModelParameterGrid (class in mriqc.classifier.sklearn_extension)
mriqc.classifier (module)
mriqc.classifier.cv (module)
mriqc.classifier.data (module)
mriqc.classifier.sklearn_extension (module)
mriqc.qc (module)
mriqc.qc.anatomical (module)
mriqc.qc.functional (module)
mriqc.reports (module)
mriqc.reports.group (module)
mriqc.reports.individual (module)
mriqc.reports.utils (module)
mriqc.workflows (module)
mriqc.workflows.anatomical (module)
mriqc.workflows.functional (module)
N
nested_fit_and_score() (in module mriqc.classifier.sklearn_extension)
NestedCVHelper (class in mriqc.classifier.cv)
P
predict() (mriqc.classifier.cv.CVHelper method)
(mriqc.classifier.cv.CVHelperBase method)
predict_dataset() (mriqc.classifier.cv.CVHelper method)
(mriqc.classifier.cv.CVHelperBase method)
R
rate_column (mriqc.classifier.cv.CVHelperBase attribute)
read_dataset() (in module mriqc.classifier.data)
read_iqms() (in module mriqc.classifier.data)
read_labels() (in module mriqc.classifier.data)
read_report_snippet() (in module mriqc.reports.utils)
RobustGridSearchCV (class in mriqc.classifier.sklearn_extension)
rpve() (in module mriqc.qc.anatomical)
S
save() (mriqc.classifier.cv.CVHelper method)
setXtest() (mriqc.classifier.cv.CVHelper method)
snr() (in module mriqc.qc.anatomical)
snr_dietrich() (in module mriqc.qc.anatomical)
spikes_mask() (in module mriqc.workflows.functional)
summary_stats() (in module mriqc.qc.anatomical)
U
unfold_columns() (in module mriqc.reports.utils)
V
volume_fraction() (in module mriqc.qc.anatomical)
W
wm2max() (in module mriqc.qc.anatomical)
X
Xtest (mriqc.classifier.cv.CVHelper attribute)
Z
zscore_dataset() (in module mriqc.classifier.data)
zscore_site() (in module mriqc.classifier.data)