CHANGELOG.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
pycoQC/Bam_to_seq_summary.py
pycoQC/Barcode_split.py
pycoQC/Fast5_to_seq_summary.py
pycoQC/Fastq_to_seq_summary.py
pycoQC/Pod5_to_seq_summary.py
pycoQC/__init__.py
pycoQC/__main__.py
pycoQC/common.py
pycoQC/pycoQC.py
pycoQC/pycoQC_parse.py
pycoQC/pycoQC_plot.py
pycoQC/pycoQC_report.py
pycoQC/templates/logo.png
pycoQC/templates/logo.svg
pycoQC/templates/pycoQC_config.json
pycoQC/templates/pycoQC_config_signal.json
pycoQC/templates/spectre.html.j2
pycoQC/templates/vendor/LICENSE.spectre
pycoQC/templates/vendor/spectre-exp.min.css
pycoQC/templates/vendor/spectre-icons.min.css
pycoQC/templates/vendor/spectre.min.css
pycoqc_ng.egg-info/PKG-INFO
pycoqc_ng.egg-info/SOURCES.txt
pycoqc_ng.egg-info/dependency_links.txt
pycoqc_ng.egg-info/entry_points.txt
pycoqc_ng.egg-info/requires.txt
pycoqc_ng.egg-info/top_level.txt
tests/test_alignment.py
tests/test_barcode_split.py
tests/test_basecaller_formats.py
tests/test_cli.py
tests/test_common.py
tests/test_common_helpers.py
tests/test_converters.py
tests/test_edge_cases.py
tests/test_end_to_end.py
tests/test_fast5.py
tests/test_fastq_parser.py
tests/test_over_time_data.py
tests/test_parse.py
tests/test_pdf_report.py
tests/test_plot_helpers.py
tests/test_pod5.py
tests/test_process_cleanup.py
tests/test_review_findings.py
tests/test_review_findings_4.py
tests/test_review_findings_5.py
tests/test_signal_only.py