Metadata-Version: 2.1
Name: frame-alignment-checks
Version: 0.0.2
Summary: Library for determining whether a RNA splicing predictor is using frame alignment information
Home-page: https://github.com/kavigupta/frame-alignment-checks
Author: Kavi Gupta
Author-email: frame-alignment-checks@kavigupta.org
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Requires-Python: >=3.9
Description-Content-Type: text/markdown


# Frame alignment checks

Set of tools for checking whether splicing prediction models are using frame alignment information. Does so on a set of
"long canonical internal coding exons", that is, exons that

 - appear in the SAM validation set (first half of the SpliceAI test set) of canonical exons in certain chromosomes
 - have exactly one ensembl annotation whose transcript is the same as the canonical transcript
 - start and end in a coding region
 - length at least 100nt

this set is built in to the package and does not need to be provided by the user.
