LICENSE
README.md
pyproject.toml
src/catnip/__init__.py
src/catnip/apply_thresholds.py
src/catnip/catnip.sh
src/catnip/catnip_cli.py
src/catnip/clean_output.py
src/catnip/cluster_extractor.py
src/catnip/compile_interclust.py
src/catnip/fasta_cleaner_helper.py
src/catnip/identify_heterogenous_clusters.py
src/catnip/mapping_helper.py
src/catnip/pre_process_bam.py
src/catnip/run_bowtie_aligner.sh
src/catnip/run_cdhit.sh
src/catnip_seq.egg-info/PKG-INFO
src/catnip_seq.egg-info/SOURCES.txt
src/catnip_seq.egg-info/dependency_links.txt
src/catnip_seq.egg-info/entry_points.txt
src/catnip_seq.egg-info/requires.txt
src/catnip_seq.egg-info/top_level.txt
tests/test_cluster_extractor.py
tests/test_compile_interclust.py
tests/test_identify_heterogenous_clusters.py
tests/test_pre_process_bam.py