anndata>=0.12.0
biopython>=1.86
fastparquet>=2025.12.0
inmoose>=0.9.1
kaleido>=1.2.0
mudata>=0.3.2
plotly>=6.5.2
pyopenms>=3.5.0
scikit-learn>=1.8.0
scipy>=1.17.0
statsmodels>=0.14.6
tqdm>=4.67.1
umap-learn>=0.5.11
sdrf-pipelines>=0.1.0

[dev]
nbval>=0.11.0
pytest>=9.0.2
pyright

[docs]
mkdocs>=1.6.1
mkdocs-awesome-pages-plugin>=2.10.1
mkdocs-gen-files>=0.6.0
mkdocs-git-revision-date-localized-plugin>=1.5.0
mkdocs-jupyter>=0.25.1
mkdocs-literate-nav>=0.6.2
mkdocs-material>=9.7.1
mkdocs-minify-plugin>=0.8.0
mkdocstrings[python]>=1.0.1
pymdown-extensions>=10.20
