.readthedocs.yaml
LICENSE
MANIFEST.in
README.md
insitucnv.yml
pyproject.toml
docs/Makefile
docs/api.rst
docs/conf.py
docs/index.rst
docs/installation.rst
docs/make.bat
docs/quickstart.rst
docs/references.rst
docs/tutorials.rst
docs/usage.rst
docs/notebooks/run_insitucnv.ipynb
docs/notebooks/tutorial_InSituCNV.ipynb
insitucnv/__init__.py
insitucnv/analysis.py
insitucnv/cli.py
insitucnv/pipeline.py
insitucnv/workflow.py
insitucnv.egg-info/PKG-INFO
insitucnv.egg-info/SOURCES.txt
insitucnv.egg-info/dependency_links.txt
insitucnv.egg-info/entry_points.txt
insitucnv.egg-info/requires.txt
insitucnv.egg-info/top_level.txt
insitucnv/pl/__init__.py
insitucnv/pl/plotting.py
insitucnv/pp/__init__.py
insitucnv/pp/genome.py
insitucnv/tl/__init__.py
insitucnv/tl/cnv.py
insitucnv/tl/moments.py
tests/test_cnv_tables.py
tests/test_imports.py