LICENSE
MANIFEST.in
README.md
pyproject.toml
src/encore/__init__.py
src/encore/__main__.py
src/encore/main.py
src/encore/analysis/__init__.py
src/encore/analysis/Cell-Assembly-Detection/assembly_activity.m
src/encore/analysis/Cell-Assembly-Detection/assembly_patterns.m
src/encore/analysis/Cell-Assembly-Detection/bin_shuffling.m
src/encore/analysis/Cell-Assembly-Detection/caller_1.m
src/encore/analysis/Cell-Assembly-Detection/circular_shift.m
src/encore/analysis/Cell-Assembly-Detection/fast_ica.m
src/encore/analysis/Cell-Assembly-Detection/shift_thetacycle.m
src/encore/analysis/Cell-Assembly-Detection/toy_simulation.m
src/encore/analysis/NeuralEnsembles/example_raster_2_ens_by_density_synth_ens.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/AssemblyGui.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/SaveFigures.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/loadTSfromHdf5.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/neuronRaster2EnsRaster.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/othercolor.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/plot_core_cells.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/plot_delta_rho.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/plot_eigs.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/plot_ens_corr.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/plot_ens_seq.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/plot_pca.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/plot_raster.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/raster2ens_by_density.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/redblue.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/shuffle.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/subSample_ensembles_pca.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/cluster_by_pow_fit.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/decisionGraph.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/delta_from_dist_mat.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/densityClust_fast.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/ens_raster_from_templates.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/ensembles_pca.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/filter_ens_by_inner_corr.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/find_core_cells.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/find_core_cells_by_correlation.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/find_ens_by_density.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/haloAssign.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/haloAssignv2.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/hist2d.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/paraSetv2.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/rand_with_int.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/randi_with_int.m
src/encore/analysis/NeuralEnsembles/AssemblyGui/analysis_codes/ts2binaryraster.m
src/encore/analysis/NeuralEnsembles/SVDEnsembles/SVDStateBinary.m
src/encore/analysis/NeuralEnsembles/SVDEnsembles/calcTFIDF.m
src/encore/analysis/NeuralEnsembles/SVDEnsembles/calc_jcut.m
src/encore/analysis/NeuralEnsembles/SVDEnsembles/calc_scut.m
src/encore/analysis/NeuralEnsembles/SVDEnsembles/findActiveFrames.m
src/encore/analysis/NeuralEnsembles/SVDEnsembles/findSVDensemble.m
src/encore/analysis/NeuralEnsembles/SVDEnsembles/findSVDensemble2.m
src/encore/analysis/NeuralEnsembles/full recording/Analysis_Workflow.m
src/encore/analysis/NeuralEnsembles/full recording/centroid_refinement.m
src/encore/analysis/NeuralEnsembles/full recording/clustering_indexes_for_global_clustering.m
src/encore/analysis/NeuralEnsembles/full recording/compute_HOM_seq_ent.m
src/encore/analysis/NeuralEnsembles/full recording/core_cells_detection_stimulis_full.m
src/encore/analysis/NeuralEnsembles/full recording/ensemble_raster_from_templates.m
src/encore/analysis/NeuralEnsembles/full recording/ensemble_transition_matrices_with_stimuli.m
src/encore/analysis/NeuralEnsembles/full recording/entropy_of_seq.m
src/encore/analysis/NeuralEnsembles/full recording synth test/subsamp_synth_test_workflow.m
src/encore/analysis/NeuralEnsembles/full recording synth test/subsamp_synth_test_workflowv2.m
src/encore/analysis/NeuralEnsembles/validation/MakeEnsembles_fix_rate.m
src/encore/analysis/NeuralEnsembles/validation/fpr_tpr.m
src/encore/analysis/NeuralEnsembles/validation/generate_data.m
src/encore/analysis/NeuralEnsembles/validation/get_carrillo_ens.m
src/encore/analysis/NeuralEnsembles/validation/get_herzog_ens.m
src/encore/analysis/NeuralEnsembles/validation/get_performance_rh.m
src/encore/analysis/NeuralEnsembles/validation/script_performance_N.m
src/encore/analysis/NeuralEnsembles/validation/script_performance_T.m
src/encore/analysis/NeuralEnsembles/validation/shadedErrorBar.m
src/encore/analysis/NeuralEnsembles/validation/sort_by_equivalence_rh.m
src/encore/analysis/SGC/EnsemblesGUI_linker_SGC.m
src/encore/analysis/SGC/SGC_ASSEMBLY_DETECTION.m
src/encore/analysis/SGC/assembly_detection/buildPatternSimilarityGraph.m
src/encore/analysis/SGC/assembly_detection/findAssemblyPatterns.m
src/encore/analysis/SGC/assembly_detection/inferAssemblyPatterns.m
src/encore/analysis/SGC/assembly_detection/meanActivityPattern.m
src/encore/analysis/SGC/assembly_detection/normalisePatternEnumeration.m
src/encore/analysis/SGC/assembly_detection/refreshAssemblyPatterns.m
src/encore/analysis/SGC/assembly_detection/spectralclustering.m
src/encore/analysis/SGC/assembly_detection/analyseGraphCommunityStructure/analyseGraphCommunityStructure.m
src/encore/analysis/SGC/assembly_detection/analyseGraphCommunityStructure/computeGraphCommunityStructureMarginals.m
src/encore/analysis/SGC/assembly_detection/analyseGraphCommunityStructure/estimate.m
src/encore/analysis/SGC/assembly_detection/analyseGraphCommunityStructure/estimateGraphCommunityStructure.m
src/encore/analysis/SGC/assembly_detection/analyseGraphCommunityStructure/graph2NETWORK.m
src/encore/analysis/SGC/assembly_detection/analyseGraphCommunityStructure/normalisePatternEnumeration.m
src/encore/analysis/SGC/include/cross_evaluation.m
src/encore/analysis/SGC/include/iif.m
src/encore/analysis/SGC/include/io/printConsoleSection.m
src/encore/analysis/SGC/include/io/print_progress.m
src/encore/analysis/SGC/include/io/print_timeinterval.m
src/encore/analysis/SGC/include/random/seed_devrandom.m
src/encore/analysis/SGC/preprocessing/cfp/CALCIUM_FLUORESCENCE_PROCESSING.m
src/encore/analysis/SGC/preprocessing/cfp/findDF_FSpikeProbability.m
src/encore/analysis/SGC/preprocessing/cfp/findSignificantDF_FCoactivity.m
src/encore/analysis/SGC/preprocessing/cfp/findSignificantFluorescenceTraces.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/Hill_v1.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/demo.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/fast_oopsi.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/run_oopsi.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/smc_oopsi.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/smc_oopsi_backward.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/smc_oopsi_forward.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/smc_oopsi_m_step.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findDF_FSpikeProbability/oopsi/z1.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findSignificantDF_FCoactivity/findSignificantCoactivity.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findSignificantDF_FCoactivity/peakfinder/peakfinder.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findSignificantFluorescenceTraces/Toolbox-Romano-et-al/EstimateBaselineNoise.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findSignificantFluorescenceTraces/Toolbox-Romano-et-al/NoiseModel.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findSignificantFluorescenceTraces/Toolbox-Romano-et-al/Rasterize.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findSignificantFluorescenceTraces/Toolbox-Romano-et-al/SignificantOdds.m
src/encore/analysis/SGC/preprocessing/cfp/inc_findSignificantFluorescenceTraces/Toolbox-Romano-et-al/mygaussfit.m
src/encore/analysis/SVD/Graphos.m
src/encore/analysis/SVD/Stoixeion.m
src/encore/analysis/SVD/calc_scut.m
src/encore/analysis/SVD/findHighactFrames.m
src/encore/analysis/SVD/AGORA/Edos_from_Sindex.m
src/encore/analysis/SVD/AGORA/Edos_from_Sindex_eig.m
src/encore/analysis/SVD/AGORA/Edos_from_Sindex_svd.m
src/encore/analysis/SVD/AGORA/Edos_from_Sindex_svd_29May14.m
src/encore/analysis/SVD/AGORA/FCMcallLC.m
src/encore/analysis/SVD/AGORA/GGcallLC.m
src/encore/analysis/SVD/AGORA/GKcallLC.m
src/encore/analysis/SVD/AGORA/KmedoidcallLC.m
src/encore/analysis/SVD/AGORA/Search_edos_coords.m
src/encore/analysis/SVD/AGORA/Search_edos_coords_b.m
src/encore/analysis/SVD/AGORA/Search_significant.m
src/encore/analysis/SVD/AGORA/clusterLC.m
src/encore/analysis/SVD/AGORA/orientation_pools.m
src/encore/analysis/SVD/AGORA/sindex_query.m
src/encore/analysis/SVD/AGORA/xcorr_sequences.m
src/encore/analysis/SVD/AGORA/xcorr_states.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/FCMclust.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/FuzSam.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/GGclust.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/GKclust.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/Kmeans.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/Kmedoid.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/PCA.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/PROJEVAL.M
src/encore/analysis/SVD/AGORA/FUZZCLUST/SAMMON.M
src/encore/analysis/SVD/AGORA/FUZZCLUST/SAMSTR.M
src/encore/analysis/SVD/AGORA/FUZZCLUST/clust_denormalize.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/clust_normalize.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/clusteval.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/nDexample.m
src/encore/analysis/SVD/AGORA/FUZZCLUST/validity.m
src/encore/analysis/SVD/AXIS/Hdist.m
src/encore/analysis/SVD/AXIS/HistEdos.m
src/encore/analysis/SVD/AXIS/Nedos.m
src/encore/analysis/SVD/AXIS/Npeaks.m
src/encore/analysis/SVD/AXIS/Pkedos.m
src/encore/analysis/SVD/AXIS/PksFrame.m
src/encore/analysis/SVD/AXIS/RasNum.m
src/encore/analysis/SVD/AXIS/Ras_tf_idf.m
src/encore/analysis/SVD/AXIS/SRactive.m
src/encore/analysis/SVD/AXIS/SRas.m
src/encore/analysis/SVD/AXIS/SRasRen.m
src/encore/analysis/SVD/AXIS/SharedCells.m
src/encore/analysis/SVD/AXIS/centroids.m
src/encore/analysis/SVD/AXIS/shuffle.m
src/encore/analysis/SVD/AXIS/sindex.m
src/encore/analysis/SVD/Otros/KmeanscallLC.m
src/encore/analysis/SVD/Otros/SortSRR.m
src/encore/analysis/SVD/Otros/clustersluisca.m
src/encore/analysis/SVD/Otros/modvalidity.m
src/encore/analysis/SVD/Otros/optnumber.m
src/encore/analysis/SVD/PHYSIS/DinamicP.m
src/encore/analysis/SVD/PHYSIS/Nedos.m
src/encore/analysis/SVD/PHYSIS/Nedos_b.m
src/encore/analysis/SVD/PHYSIS/RasNum.m
src/encore/analysis/SVD/PHYSIS/SRactive.m
src/encore/analysis/SVD/PHYSIS/compara.m
src/encore/analysis/SVD/PHYSIS/diversity.m
src/encore/analysis/SVD/PHYSIS/sindex.m
src/encore/analysis/SVD/PLEGADES/CyFolds.m
src/encore/analysis/SVD/PLEGADES/P_sec.m
src/encore/analysis/SVD/PLEGADES/c_pathways.m
src/encore/analysis/SVD/PLEGADES/cumulative_paths.m
src/encore/analysis/SVD/PLEGADES/d_assemblies.m
src/encore/analysis/SVD/PLEGADES/secuencias.m
src/encore/analysis/SVD/PLEGADES/DRAKONTOS/drakontos.m
src/encore/analysis/SVD/PLEGADES/DRAKONTOS/fndHE.m
src/encore/analysis/SVD/PLEGADES/DRAKONTOS/fndVer.m
src/encore/analysis/SVD/PLEGADES/DRAKONTOS/getCiclo.m
src/encore/analysis/SVD/PLEGADES/DRAKONTOS/getM.m
src/encore/analysis/SVD/PLEGADES/DRAKONTOS/isEu.m
src/encore/analysis/SVD/PLEGADES/DRAKONTOS/isHam.m
src/encore/analysis/SVD/TROPOS/Distancia.m
src/encore/analysis/SVD/TROPOS/eigenb.m
src/encore/analysis/SVD/TROPOS/lle.m
src/encore/analysis/SVD/TROPOS/lleeLC.m
src/encore/analysis/SVD/TROPOS/politropos.m
src/encore/analysis/Xsembles2P/Xsembles_2P.m
src/encore/analysis/Xsembles2P/Xsembles_2P_Viewer.m
src/encore/analysis/Xsembles2P/Catrex/Combine_Neurons.m
src/encore/analysis/Xsembles2P/Catrex/Evaluate_Neurons.m
src/encore/analysis/Xsembles2P/Catrex/Find_Cell_by_XY.m
src/encore/analysis/Xsembles2P/Catrex/Find_Duplicates.m
src/encore/analysis/Xsembles2P/Catrex/Get_Eccentricity.m
src/encore/analysis/Xsembles2P/Catrex/Get_Intersected_ROIs.m
src/encore/analysis/Xsembles2P/Catrex/Get_Neuronal_Masks.m
src/encore/analysis/Xsembles2P/Catrex/Get_Neuropil_Mask.m
src/encore/analysis/Xsembles2P/Catrex/Get_Overlaping.m
src/encore/analysis/Xsembles2P/Catrex/Get_ROIs_Image.m
src/encore/analysis/Xsembles2P/Catrex/Get_Raster_From_Inference.m
src/encore/analysis/Xsembles2P/Catrex/Get_Spike_Inference.m
src/encore/analysis/Xsembles2P/Catrex/Get_Stimulated_Frames.m
src/encore/analysis/Xsembles2P/Catrex/Get_Transients.m
src/encore/analysis/Xsembles2P/Catrex/Normalize_Movie.m
src/encore/analysis/Xsembles2P/Catrex/Plot_Transients.m
src/encore/analysis/Xsembles2P/Catrex/Preprocessing.m
src/encore/analysis/Xsembles2P/Catrex/Read_AVI_File.m
src/encore/analysis/Xsembles2P/Catrex/Read_Tiff_File.m
src/encore/analysis/Xsembles2P/Catrex/Select_Tuned_Neurons.m
src/encore/analysis/Xsembles2P/Catrex/Smooth_Transients.m
src/encore/analysis/Xsembles2P/Catrex/Sort_Neuron_Data.m
src/encore/analysis/Xsembles2P/Deconvolution Caiman/GetSn.m
src/encore/analysis/Xsembles2P/Deconvolution Caiman/estimate_time_constant.m
src/encore/analysis/Xsembles2P/Deconvolution Caiman/foopsi_oasisAR2.m
src/encore/analysis/Xsembles2P/Deconvolution Caiman/oasisAR1.m
src/encore/analysis/Xsembles2P/Deconvolution Caiman/oasisAR2.m
src/encore/analysis/Xsembles2P/General/Attenuate_Colors.m
src/encore/analysis/Xsembles2P/General/Circle_Mask.m
src/encore/analysis/Xsembles2P/General/Darken_Colors.m
src/encore/analysis/Xsembles2P/General/Get_Color.m
src/encore/analysis/Xsembles2P/General/Get_SEM.m
src/encore/analysis/Xsembles2P/General/Hold_Figure.m
src/encore/analysis/Xsembles2P/General/Hotelling_T2_Test.m
src/encore/analysis/Xsembles2P/General/Interpolate.m
src/encore/analysis/Xsembles2P/General/Plot_Area.m
src/encore/analysis/Xsembles2P/General/Plot_Raster.m
src/encore/analysis/Xsembles2P/General/Plot_Stimulation.m
src/encore/analysis/Xsembles2P/General/Read_Colors.m
src/encore/analysis/Xsembles2P/General/Reshape_Raster.m
src/encore/analysis/Xsembles2P/General/Set_Axes.m
src/encore/analysis/Xsembles2P/General/Set_Colormap_Blue_White_Red.m
src/encore/analysis/Xsembles2P/General/Set_Figure.m
src/encore/analysis/Xsembles2P/General/Set_Label_Time.m
src/encore/analysis/Xsembles2P/General/Validate_Name.m
src/encore/analysis/Xsembles2P/Motion correction/Fast_Registration.m
src/encore/analysis/Xsembles2P/Motion correction/Fast_Tiff_Write.m
src/encore/analysis/Xsembles2P/Motion correction/Save_Tiff_Fast.m
src/encore/analysis/Xsembles2P/Optogenetics/Join_Optogenetics_File.m
src/encore/analysis/Xsembles2P/Optogenetics/Plot_Neurons_Stimulated.m
src/encore/analysis/Xsembles2P/Optogenetics/Read_Optogenetics_File.m
src/encore/analysis/Xsembles2P/Optogenetics/Write_XY_Prairie_Stim.m
src/encore/analysis/Xsembles2P/Optogenetics/xml2struct.m
src/encore/analysis/Xsembles2P/Suite2P_JP/Find_Cells_J2P.m
src/encore/analysis/Xsembles2P/Suite2P_JP/Get_Neuropil_Basis.m
src/encore/analysis/Xsembles2P/Suite2P_JP/Get_Spatial_Mask.m
src/encore/analysis/Xsembles2P/Suite2P_JP/getConnected.m
src/encore/analysis/Xsembles2P/Suite2P_JP/getIpix.m
src/encore/analysis/Xsembles2P/Suite2P_JP/my_conv.m
src/encore/analysis/Xsembles2P/Suite2P_JP/my_conv2_circ.m
src/encore/analysis/Xsembles2P/Suite2P_JP/my_max.m
src/encore/analysis/Xsembles2P/Suite2P_JP/my_min.m
src/encore/analysis/Xsembles2P/Suite2P_JP/my_min2.m
src/encore/analysis/Xsembles2P/Tuning/Get_Evoked_Neurons.m
src/encore/analysis/Xsembles2P/Tuning/Get_Ori_Cirvar.m
src/encore/analysis/Xsembles2P/Tuning/Get_Trial_Responses.m
src/encore/analysis/Xsembles2P/Voltage recording/Join_Voltage_Recordings.m
src/encore/analysis/Xsembles2P/Voltage recording/Read_Voltage_Recording.m
src/encore/analysis/Xsembles2P/Xsembles/Coactivity_Threshold.m
src/encore/analysis/Xsembles2P/Xsembles/Contrast_Index.m
src/encore/analysis/Xsembles2P/Xsembles/Contrast_Test.m
src/encore/analysis/Xsembles2P/Xsembles/Dendrogram_Node_Order.m
src/encore/analysis/Xsembles2P/Xsembles/Ensemble_Duration.m
src/encore/analysis/Xsembles2P/Xsembles/Filter_Raster_By_Network.m
src/encore/analysis/Xsembles2P/Xsembles/Find_Neurons_By_XY.m
src/encore/analysis/Xsembles2P/Xsembles/Find_Ori_Ensembles.m
src/encore/analysis/Xsembles2P/Xsembles/Find_Peaks.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Adjacency_From_Raster.m
src/encore/analysis/Xsembles2P/Xsembles/Get_EPI.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Neuron_ID.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Peak_Indices.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Peak_Vectors.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Peaks_Similarity.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Xsemble_Activity.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Xsemble_Neurons.m
src/encore/analysis/Xsembles2P/Xsembles/Get_Xsembles.m
src/encore/analysis/Xsembles2P/Xsembles/Highlight_Neurons_Selected.m
src/encore/analysis/Xsembles2P/Xsembles/Linkage_JP.m
src/encore/analysis/Xsembles2P/Xsembles/Neuronal_Network.m
src/encore/analysis/Xsembles2P/Xsembles/Neuronal_Network_Parallel.m
src/encore/analysis/Xsembles2P/Xsembles/Pairwise_Coactivity.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Ensemble_Activity.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Ensemble_Similarity.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Ensemble_Structure.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Ensemble_Trials.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Neuron_Signal.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Neuron_Test.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Raster_And_External.m
src/encore/analysis/Xsembles2P/Xsembles/Plot_Xsemble_Raster.m
src/encore/analysis/Xsembles2P/Xsembles/Recreate_Movie.m
src/encore/analysis/Xsembles2P/Xsembles/Select_Best_Index.m
src/encore/analysis/Xsembles2P/Xsembles/Select_Neuron_Threshold.m
src/encore/analysis/Xsembles2P/Xsembles/Shuffle_Raster.m
src/encore/analysis/Xsembles2P/Xsembles/Similarity_Within_Rasters.m
src/encore/analysis/Xsembles2P/Xsembles/Sort_Ensembles_By_EPI.m
src/encore/analysis/Xsembles2P/Xsembles/Sort_Neurons_By_Weights.m
src/encore/analysis/Xsembles2P/Xsembles/Sort_Raster.m
src/encore/analysis/Xsembles2P/Xsembles/Subnetworks.m
src/encore/analysis/Xsembles2P/Xsembles/Test_Ensemble_Similarity.m
src/encore/analysis/Xsembles2P/Xsembles/Vector_and_Neuron_ID.m
src/encore/config/encore_runners_config.yaml
src/encore/data/__init__.py
src/encore/data/assign_data.py
src/encore/data/load_data.py
src/encore/gui/ENCORE_logo.png
src/encore/gui/MainWindow.ui
src/encore/plotters/MatplotlibWidget.py
src/encore/plotters/encore.py
src/encore/plotters/encore_plots.py
src/encore/runners/encore.py
src/encore/utils/data_converters.py
src/encore/utils/metrics.py
src/encore/utils/parameters_validators.py
src/encore/utils/text_formatting.py
src/encore/validators/algorithm_inputs.py
src/encore/validators/algorithm_parameters.py
src/encore/validators/algorithm_results.py
src/encore/validators/runners_config.py
src/encore_toolkit.egg-info/PKG-INFO
src/encore_toolkit.egg-info/SOURCES.txt
src/encore_toolkit.egg-info/dependency_links.txt
src/encore_toolkit.egg-info/entry_points.txt
src/encore_toolkit.egg-info/requires.txt
src/encore_toolkit.egg-info/top_level.txt
tests/test_basic.py
tests/test_runners.py