DAY-EC activated.
DAY-EC activated.

		# Remove -n to execute (not dry-run)

Requesting profile: slurm
Attempting to deactivate existing environments & re-init with --project mk-gotime3 .
Remote call detected. Activating conda hack
Your config files in /fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis/config/day_profiles/slurm are newer than the templates. clear 2 go.
yq is already installed.
WARNING: sentieon lic file /fsx/data/cached_envs/x.lic not found.
Detected sentieon license file: /fsx/data/cached_envs/Life_Sciences_Manufacturing_Corporation_eval.lic will be used and overrides what is in ~/.config/daylily/daylily_cli_global.yaml

!!!!
!!!!
    WARNING: gittag:null not found touched in  ~/.config/daylily/null 
     This might be fine if you have cloned a more recent release of daylily compared to the tagged version used to create this ephemeral cluster.
     ... however, this is not expected. If you are running an ephemeral cluster headnode for days+, this is not the intended use of daylily, a fresh build might be called for.
     This is checked by testing if ~/.config/daylily/null exists .
!!!!
 > >> >>>   genome build set to ::: hg38_broad  
       _______ GREAT SUCCESS _______       
Remote call detected. Activating conda hack
Your config files in /fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis/config/day_profiles/slurm are newer than the templates. clear 2 go.
Executing: snakemake --profile=/fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis/config/day_profiles/slurm produce_alignstats --config dppl=[na] -p -j 20 -k
Config file config/global.yaml is extended by additional config specified via the command line.
loading global: /fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis/config/global_AWSPC.yaml
Config file config/global_AWSPC.yaml is extended by additional config specified via the command line.
loading profile rule_config: /fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis/config/day_profiles/slurm/rule_config.yaml
Config file config/day_profiles/slurm/rule_config.yaml is extended by additional config specified via the command line.
INFO::: The genome build hg38_broad is supported.  The genome build prefix is 'chr''.
...WARNING: No aligners set in the config.
aligners (final): []
...INFO: No dedupers set in config. Defaulting to na (no dedup).
deduper (final): [na]
...WARNING: No snv_callers set in the config.
SNV Callers (final): []
Somatic SNV Callers:[senttn]
... WARNING: No sv_callers set in the config.
A    N   A   L  Y S I S    SAMPLE TABLE DETECTED ::: /fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis/config/samples.tsv
A    N   A   L  Y S I S    UNIT TABLE DETECTED ::: /fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis/config/units.tsv
Building DAG of jobs...
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11088-Z0865-CTGCAGAGGCAGAGAT-prod-cram-1-CTGCAGAGGCAGAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11088-Z0865-CTGCAGAGGCAGAGAT-prod-cram-1-CTGCAGAGGCAGAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11089-Z0866-CGGCAGTGCATGTGAT-prod-cram-2-CGGCAGTGCATGTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11089-Z0866-CGGCAGTGCATGTGAT-prod-cram-2-CGGCAGTGCATGTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11090-Z0867-CTCATGGCATGAGCAGAT-prod-cram-3-CTCATGGCATGAGCAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11090-Z0867-CTCATGGCATGAGCAGAT-prod-cram-3-CTCATGGCATGAGCAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11091-Z0868-CATGAGTCAGATTGAT-prod-cram-4-CATGAGTCAGATTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11091-Z0868-CATGAGTCAGATTGAT-prod-cram-4-CATGAGTCAGATTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11092-Z0869-CAAGCATCTCAGTGAT-prod-cram-5-CAAGCATCTCAGTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11092-Z0869-CAAGCATCTCAGTGAT-prod-cram-5-CAAGCATCTCAGTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11093-Z0870-CATCATCAAGCACATGAT-prod-cram-6-CATCATCAAGCACATGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11093-Z0870-CATCATCAAGCACATGAT-prod-cram-6-CATCATCAAGCACATGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11094-Z0871-CTTAGCGCATCGAT-prod-cram-7-CTTAGCGCATCGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11094-Z0871-CTTAGCGCATCGAT-prod-cram-7-CTTAGCGCATCGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11095-Z0872-CACAATGCGCTGTGAT-prod-cram-8-CACAATGCGCTGTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11095-Z0872-CACAATGCGCTGTGAT-prod-cram-8-CACAATGCGCTGTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11096-Z0873-CAATATGCGATCAGAT-prod-cram-9-CAATATGCGATCAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11096-Z0873-CAATATGCGATCAGAT-prod-cram-9-CAATATGCGATCAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11097-Z0874-CTTACATGTGCGAT-prod-cram-10-CTTACATGTGCGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11097-Z0874-CTTACATGTGCGAT-prod-cram-10-CTTACATGTGCGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11098-Z0875-CTGTGTGCCTGCAGAT-prod-cram-11-CTGTGTGCCTGCAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11098-Z0875-CTGTGTGCCTGCAGAT-prod-cram-11-CTGTGTGCCTGCAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11099-Z0876-CAATGCTGCTCATGCGAT-prod-cram-12-CAATGCTGCTCATGCGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11099-Z0876-CAATGCTGCTCATGCGAT-prod-cram-12-CAATGCTGCTCATGCGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11100-Z0877-CGATCTCATCATTGAT-prod-cram-13-CGATCTCATCATTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11100-Z0877-CGATCTCATCATTGAT-prod-cram-13-CGATCTCATCATTGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11101-Z0878-CAATCAGATGCTAGAT-prod-cram-14-CAATCAGATGCTAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11101-Z0878-CAATCAGATGCTAGAT-prod-cram-14-CAATCAGATGCTAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11102-Z0879-CAAGAGTGATAGAT-prod-cram-15-CAAGAGTGATAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11102-Z0879-CAAGAGTGATAGAT-prod-cram-15-CAAGAGTGATAGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11103-Z0880-CTTGCGTCATCATGAT-prod-cram-16-CTTGCGTCATCATGAT-PF-UG-ULTIMA/align/ug/ ... 
PREP CRAM:: results/day/hg38_broad//505064-20260331-2020-L11103-Z0880-CTTGCGTCATCATGAT-prod-cram-16-CTTGCGTCATCATGAT-PF-UG-ULTIMA/align/ug/ ... 
LockException:
Error: Directory cannot be locked. Please make sure that no other Snakemake process is trying to create the same files in the following directory:
/fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis
If you are sure that no other instances of snakemake are running on this directory, the remaining lock was likely caused by a kill signal or a power loss. It can be removed with the --unlock argument.
RETURN CODE: 0
[INFO] Workflow exited with status 0
DAY-EC activated.
(DAY-EC) ubuntu@ip-10-0-0-155:/fsx/analysis_results/ubuntu/dayoa/daylily-omics-analysis$
