.gitignore
LICENSE
MANIFEST.in
NOTICE
README.md
accelerator_single_machine.json
convert_ifv2_to_jax.py
download_cache_data.sh
download_template_data.sh
predict.sh
pyproject.toml
run_intellifold.py
THIRD_PARTY_LICENSES/Boltz-MIT.txt
intellifold/__init__.py
intellifold/af3_schema.pkl
intellifold/cli.py
intellifold/convert.py
intellifold/parallel.py
intellifold/patches.py
intellifold/run_jax_inference.py
intellifold/weights.py
intellifold.egg-info/PKG-INFO
intellifold.egg-info/SOURCES.txt
intellifold.egg-info/dependency_links.txt
intellifold.egg-info/entry_points.txt
intellifold.egg-info/requires.txt
intellifold.egg-info/top_level.txt
intellifold/data/__init__.py
intellifold/data/const.py
intellifold/data/types.py
intellifold/data/augmentation/__init__.py
intellifold/data/augmentation/utils.py
intellifold/data/crop/__init__.py
intellifold/data/crop/boltz.py
intellifold/data/crop/cropper.py
intellifold/data/feature/__init__.py
intellifold/data/feature/featurizer.py
intellifold/data/feature/pad.py
intellifold/data/feature/symmetry.py
intellifold/data/filter/__init__.py
intellifold/data/filter/dynamic/__init__.py
intellifold/data/filter/dynamic/date.py
intellifold/data/filter/dynamic/filter.py
intellifold/data/filter/dynamic/max_residues.py
intellifold/data/filter/dynamic/resolution.py
intellifold/data/filter/dynamic/size.py
intellifold/data/filter/dynamic/subset.py
intellifold/data/filter/static/__init__.py
intellifold/data/filter/static/filter.py
intellifold/data/filter/static/ligand.py
intellifold/data/filter/static/polymer.py
intellifold/data/inference/__init__.py
intellifold/data/inference/data_tools.py
intellifold/data/inference/params.py
intellifold/data/inference/utils.py
intellifold/data/module/__init__.py
intellifold/data/module/inference.py
intellifold/data/module/training.py
intellifold/data/msa/__init__.py
intellifold/data/msa/mmseqs2.py
intellifold/data/parse/__init__.py
intellifold/data/parse/a3m.py
intellifold/data/parse/csv.py
intellifold/data/parse/fasta.py
intellifold/data/parse/schema.py
intellifold/data/parse/yaml.py
intellifold/data/sample/__init__.py
intellifold/data/sample/cluster.py
intellifold/data/sample/distillation.py
intellifold/data/sample/random.py
intellifold/data/sample/sampler.py
intellifold/data/template/__init__.py
intellifold/data/template/template_featurizer.py
intellifold/data/template/template_parser.py
intellifold/data/template/template_realign.py
intellifold/data/template/template_utils.py
intellifold/data/tokenize/__init__.py
intellifold/data/tokenize/boltz.py
intellifold/data/tokenize/tokenizer.py
intellifold/data/tools/__init__.py
intellifold/data/tools/common.py
intellifold/data/tools/kalign.py
intellifold/data/tools/logger.py
intellifold/data/tools/search.py
intellifold/data/write/__init__.py
intellifold/data/write/mmcif.py
intellifold/data/write/pdb.py
intellifold/data/write/utils.py
intellifold/data/write/writer.py
intellifold/openfold/__init__.py
intellifold/openfold/config.py
intellifold/openfold/inference_config.py
intellifold/openfold/v2_flash_inference_config.py
intellifold/openfold/v2_inference_config.py
intellifold/openfold/model/__init__.py
intellifold/openfold/model/backbone.py
intellifold/openfold/model/confidences.py
intellifold/openfold/model/diffusion.py
intellifold/openfold/model/dropout.py
intellifold/openfold/model/embedders.py
intellifold/openfold/model/heads.py
intellifold/openfold/model/model.py
intellifold/openfold/model/outer_product_mean.py
intellifold/openfold/model/pairformer.py
intellifold/openfold/model/primitives.py
intellifold/openfold/model/triangular_attention.py
intellifold/openfold/model/triangular_multiplicative_update.py
intellifold/openfold/utils/__init__.py
intellifold/openfold/utils/atom_token_conversion.py
intellifold/openfold/utils/chunk_utils.py
intellifold/openfold/utils/precision_utils.py
intellifold/openfold/utils/tensor_utils.py
intellifold/openfold/utils/kernel/__init__.py
intellifold/openfold/utils/kernel/traceable_evoformer_attn.py
intellifold/openfold/utils/layer_norm/__init__.py
intellifold/openfold/utils/layer_norm/layer_norm.py
intellifold/openfold/utils/layer_norm/torch_ext_compile.py
intellifold/openfold/utils/layer_norm/kernel/compat.h
intellifold/openfold/utils/layer_norm/kernel/layer_norm_cuda.cpp
intellifold/openfold/utils/layer_norm/kernel/layer_norm_cuda_kernel.cu
intellifold/openfold/utils/layer_norm/kernel/type_shim.h
intellifold/steering/__init__.py
intellifold/steering/constants.py
intellifold/steering/guidance.py
intellifold/steering/potentials.py
intellifold/steering/rdkit_features.py
runner/__init__.py
runner/intellifold_inference.py
runner/run_templates_search.py