# Ignore git and editor/IDE files
.git
.gitignore
.vscode/
.idea/

# Python artifacts and virtual envs
__pycache__/
*.pyc
*.pyo
*.pyd
.env
.venv/
venv/
env/
.venv/*

# Build outputs
build/
dist/
*.egg-info/
.pytest_cache/
.mypy_cache/
.ruff_cache/
.tox/

# Nextflow/work pipeline outputs and previews
work/
nextflow_results/
preview_results/
test_results/

# Examples and local outputs
examples/output/
my_first_analysis/
workflow_output/

# OS files
.DS_Store
Thumbs.db

# Large data files you don't want in the context
*.fasta
*.fa
*.fq
*.fastq
*.vcf
*.bam
*.sam
*.bam.bai
*.bn*

# Dockerfile and other dev files are intentionally included
