LICENSE
README.md
pyproject.toml
src/panthera/__init__.py
src/panthera/api.py
src/panthera/mcp_server.py
src/panthera/core/__init__.py
src/panthera/core/__main__.py
src/panthera/core/orchestrator.py
src/panthera/core/bio/__init__.py
src/panthera/core/bio/blocks.py
src/panthera/core/bio/extend_phaseset.py
src/panthera/core/bio/gene.py
src/panthera/core/bio/io.py
src/panthera/core/bio/mutation.py
src/panthera/core/bio/parse_bg_vcf.py
src/panthera/core/bio/parse_genome.py
src/panthera/core/bio/split_by_haplotype.py
src/panthera/core/bio/wig.py
src/panthera/core/pipelines/__init__.py
src/panthera/core/pipelines/isolate.py
src/panthera/core/pipelines/query_fasta.py
src/panthera/core/pipelines/query_genomic_range.py
src/panthera/core/pipelines/survey.py
src/panthera/core/ssp/__init__.py
src/panthera/core/ssp/calc_delta.py
src/panthera/core/ssp/load_model.py
src/panthera/core/ssp/model_paths.py
src/panthera/core/ssp/onehotencoder.py
src/panthera/core/ssp/predict.py
src/panthera/core/ssp/ssp_manager.py
src/panthera/data/__init__.py
src/panthera/data/genetic_background_vcf/__init__.py
src/panthera/models/modelp.pb
src/panthera/models/spliceai.pb
src/panthera/utils/constants.py
src/panthera/utils/exceptions.py
src/panthera/utils/get_unique_df.py
src/panthera/utils/logging_config.py
src/panthera/utils/runtime.py
src/panthera_splice.egg-info/PKG-INFO
src/panthera_splice.egg-info/SOURCES.txt
src/panthera_splice.egg-info/dependency_links.txt
src/panthera_splice.egg-info/entry_points.txt
src/panthera_splice.egg-info/requires.txt
src/panthera_splice.egg-info/top_level.txt