LICENSE
MANIFEST.in
README.md
pyproject.toml
BI/__init__.py
BI/BNN/__init__.py
BI/BNN/activations.py
BI/BNN/bnn.py
BI/BNN/__pycache__/__init__.cpython-310.pyc
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BI/Build/Build api reference.ipynb
BI/Build/Build_NP_light.py
BI/Build/Build_R_documentation.py
BI/Build/Build_TFP_light.py
BI/Build/Build_test_file.py
BI/Build/Doc_R.json
BI/Build/Doc_python.json
BI/Data/manip.py
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BI/Diagnostic/Diag.py
BI/Diagnostic/Diag2.py
BI/Diagnostic/__init__.py
BI/Diagnostic/jax_diagnostics.py
BI/Diagnostic/jax_summary.py
BI/Diagnostic/patch_diag.py
BI/Diagnostic/ppc.py
BI/Diagnostic/regression_plot.py
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BI/ML/__init__.py
BI/ML/ml.py
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BI/Models/BNNC.py
BI/Models/DPMM.py
BI/Models/GMM.py
BI/Models/PCA.py
BI/Models/SRM.py
BI/Models/__init__.py
BI/Models/models.py
BI/Models/surv.py
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BI/Network/Net.py
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BI/Network/metrics.py
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BI/Network/util.py
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BI/PostModel/__init__.py
BI/PostModel/to_latex.py
BI/R/BI doc.py
BI/R/R warpper.R
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BI/Resources/Howell1.csv
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BI/Resources/Kline.csv
BI/Resources/Kline2.csv
BI/Resources/KosterLeckie copy.rda
BI/Resources/KosterLeckie.rda
BI/Resources/NBDA_data.json
BI/Resources/Sim dat Gamma poisson.csv
BI/Resources/Sim data multinomial.csv
BI/Resources/Sim data multivariatenormal.csv
BI/Resources/UCBadmit.csv
BI/Resources/WaffleDivorce.csv
BI/Resources/__init__.py
BI/Resources/chimpanzees.csv
BI/Resources/datasets.py
BI/Resources/elephants.csv
BI/Resources/islandsDistMatrix.csv
BI/Resources/mastectomy.csv
BI/Resources/milk.csv
BI/Resources/panama_ewa.csv
BI/Resources/phylo_L_meta.csv
BI/Resources/phylo_L_poisson.csv
BI/Resources/phylo_L_repeated.csv
BI/Resources/phylo_L_simple.csv
BI/Resources/phylo_L_slopes.csv
BI/Resources/phylo_data_meta.csv
BI/Resources/phylo_data_poisson.csv
BI/Resources/phylo_data_repeated.csv
BI/Resources/phylo_data_simple.csv
BI/Resources/phylo_data_slopes.csv
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BI/Samplers/Model_handler.py
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BI/Utils/Effects.py
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BI/Utils/ImportManager.py
BI/Utils/SampledData.py
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BI/Utils/link.py
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Bayesium.egg-info/PKG-INFO
Bayesium.egg-info/SOURCES.txt
Bayesium.egg-info/dependency_links.txt
Bayesium.egg-info/requires.txt
Bayesium.egg-info/top_level.txt
Documentation/__init__.py
Documentation/_setup.py
Test/Models.py
Test/test_bi_simple.py
Test/test_save_load.py
Test/Capture-Recapture (WIP)/check_parity.py
Test/Capture-Recapture (WIP)/compare_cjs_ms.py
Test/Capture-Recapture (WIP)/model_bi.py
Test/Capture-Recapture (WIP)/plot_comparison.py
Test/Capture-Recapture (WIP)/prepare_data.py
Test/Capture-Recapture (WIP)/run_phase3_scalability.py
Test/Capture-Recapture (WIP)/run_stan_benchmark.py
Test/Capture-Recapture (WIP)/verify_data.py
Test/Copula (WIP)/gaussian_copula_approaches.py
Test/Copula (WIP)/test_icdf_patch.py
Test/Copula (WIP)/test_inference.py
Test/Copula (WIP)/test_mock.py
Test/DP-VAE (WIP)/perfect_dp_mixture.py
Test/Diagnostic/diagnose sampling/__init__.py
Test/Diagnostic/diagnose sampling/diagnose.py
Test/Diagnostic/personality_traits/traits.py
Test/Diagnostic/ppc/test_ppc.py
Test/Diagnostic/regression/test_regression.py
Test/Diagnostic/sensitivity/test_sensitivity.py
Test/Diagnostic/summary/diag test.py
Test/Diagnostic/summary/jax_diagnostics.py
Test/Diagnostic/summary/patch_diag.py
Test/Distributions/distribution_numpyro.py
Test/Distributions/distribution_tfp.py
Test/EWA/run_comparison.py
Test/EWA/BI_backend/model.py
Test/GMM (WIP)/compare.py
Test/GMM (WIP)/ggmm_bi.py
Test/HGAM (WIP)/benchmark_hgam_bi.py
Test/HGAM (WIP)/gam_utils.py
Test/HGAM (WIP)/plot_hgam_comparison.py
Test/HGAM (WIP)/test_native_gam.py
Test/MGM and DPMM/7.MGM_DPM_Similarity_Test.py
Test/MGM and DPMM/Similarity_Test.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_3way_beast.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_beast_bi.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_bl_beast_equivalence.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_estimations.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_posteriors.py
Test/Modeling Evolutionary Heterogeneity (WIP)/compare_posteriors_blmarg.py
Test/Modeling Evolutionary Heterogeneity (WIP)/create_xmls.py
Test/Modeling Evolutionary Heterogeneity (WIP)/tree_data.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_bi_gamma.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_bi_gamma_fixed.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_bi_gamma_fixed2.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_bi_gamma_fixed3.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/fit_bi_gamma_vec.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_1_Spatial_Heterogeneity/parse_trees.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_2_Temporal_Heterogeneity/fit_bi_ucln.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_2_Temporal_Heterogeneity/fit_bi_ucln_vec.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_3_Spatial_BLMarg/fit_bi_gamma_blmarg.py
Test/Modeling Evolutionary Heterogeneity (WIP)/Model_4_Temporal_BLMarg/fit_bi_ucln_blmarg.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/check_vectorization_logic.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/generate_xtx_log.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/load_data.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/tree_6.py
Test/Modeling Evolutionary Heterogeneity (WIP)/scripts/tree_data.py
Test/Nested effect/01_generative_model.py
Test/Nested effect/02_centered_inference.py
Test/Nested effect/03_noncentered_inference.py
Test/Nested effect/04_builtin_function.py
Test/Network/Multiplex (WIP)/SIM.py
Test/Network/Network metrics/network_metrics.py
Test/Network/SRM/SIM.py
Test/Network/SRM/fit_comparison.py
Test/PCA/PCA.py
Test/Phylogenic analysis/Model_1_Simple/fit_bi_simple.py
Test/Phylogenic analysis/Model_2_Poisson/fit_bi_pois.py
Test/Phylogenic analysis/Model_3_Repeated/fit_bi_repeat.py
Test/Phylogenic analysis/Model_4_Meta/fit_bi_meta.py
Test/Phylogenic analysis/Model_5_Slopes/fit_bi_slopes.py
Test/Repertoire/benchmark.py
Test/Repertoire/bi_only.py
Test/Repertoire/check_stan.py
Test/Repertoire/compare_moments_p.py
Test/Repertoire/compare_summary.py
Test/Repertoire/save_stan_samples.py
Test/Rethinking/Numpyro backend/1.Continuous variable.py
Test/Rethinking/Numpyro backend/10.Zero inflated.py
Test/Rethinking/Numpyro backend/11.Varying intercepts.py
Test/Rethinking/Numpyro backend/12.Varying effects.py
Test/Rethinking/Numpyro backend/13.Gaussian processes.py
Test/Rethinking/Numpyro backend/2.Categorical variable.py
Test/Rethinking/Numpyro backend/3.Continuous interactions.py
Test/Rethinking/Numpyro backend/4.Binomial.py
Test/Rethinking/Numpyro backend/5.Binomial with indices.py
Test/Rethinking/Numpyro backend/6.Poisson.py
Test/Rethinking/Numpyro backend/7.Negative binomial.py
Test/Rethinking/Numpyro backend/8.Multinomial.py
Test/Rethinking/Numpyro backend/9.Beta binomial.py
Test/Rethinking/Numpyro backend/Utils.py
Test/Rethinking/Numpyro backend/run_all.py
Test/Rethinking/TFP backend/1.Continuous variable.py
Test/Rethinking/TFP backend/10.Zero inflated.py
Test/Rethinking/TFP backend/11.Varying intercepts.py
Test/Rethinking/TFP backend/12.Varying effects.py
Test/Rethinking/TFP backend/13.Gaussian processes.py
Test/Rethinking/TFP backend/2.Categorical variable.py
Test/Rethinking/TFP backend/3.Continuous interactions.py
Test/Rethinking/TFP backend/4.Binomial.py
Test/Rethinking/TFP backend/5.Binomial with indices.py
Test/Rethinking/TFP backend/6.Poisson.py
Test/Rethinking/TFP backend/7.Negative binomial.py
Test/Rethinking/TFP backend/8.Multinomial.py
Test/Rethinking/TFP backend/9.Beta binomial.py
Test/Rethinking/TFP backend/Utils.py
Test/Rethinking/TFP backend/run_all.py
Test/Rethinking/TFP backend/scratch/check_summary.py
Test/Rethinking/TFP backend/scratch/test_df.py
Test/Survival analysis/Survival analysis.py
Test/VINE (WIP)/__init__.py
Test/VINE (WIP)/data_parser.py
Test/VINE (WIP)/decoder.py
Test/VINE (WIP)/embeddings.py
Test/VINE (WIP)/likelihood.py
Test/VINE (WIP)/optimizer.py
Test/VINE (WIP)/validation.py
Test/Workflow/workflow.py