LICENSE
README.md
pyproject.toml
asymmetree/__init__.py
asymmetree.egg-info/PKG-INFO
asymmetree.egg-info/SOURCES.txt
asymmetree.egg-info/dependency_links.txt
asymmetree.egg-info/requires.txt
asymmetree.egg-info/top_level.txt
asymmetree/analysis/__init__.py
asymmetree/analysis/best_matches.py
asymmetree/analysis/horizontal_gene_transfer.py
asymmetree/genome/__init__.py
asymmetree/genome/genome_simulation.py
asymmetree/io/__init__.py
asymmetree/io/sequences.py
asymmetree/io/substitution_model.py
asymmetree/seqevolve/__init__.py
asymmetree/seqevolve/alignment.py
asymmetree/seqevolve/evolver.py
asymmetree/seqevolve/evolving_sequence.py
asymmetree/seqevolve/heterogeneity.py
asymmetree/seqevolve/indels.py
asymmetree/seqevolve/substitution.py
asymmetree/seqevolve/data/BLOSUM62.paml
asymmetree/seqevolve/data/DAYHOFF.paml
asymmetree/seqevolve/data/JTT.paml
asymmetree/seqevolve/data/LG.paml
asymmetree/seqevolve/data/WAG.paml
asymmetree/seqevolve/data/__init__.py
asymmetree/treeevolve/__init__.py
asymmetree/treeevolve/distance_noise.py
asymmetree/treeevolve/genes.py
asymmetree/treeevolve/rate_heterogeneity.py
asymmetree/treeevolve/species.py
asymmetree/utils/__init__.py
asymmetree/utils/distance_calculation.py
asymmetree/utils/phylogenetic_trees.py
asymmetree/utils/sampling.py
asymmetree/visualization/__init__.py
asymmetree/visualization/tree_vis.py