CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
pytest.ini
requirements.txt
setup.cfg
docs/ADR-001-remove-heavyweight-dependencies.md
docs/API.md
docs/ARCHITECTURE_BEFORE_AFTER.md
docs/DAY13_PERFORMANCE_SUMMARY.md
docs/DEVELOPMENT_GUIDE.md
docs/DOCKER_USAGE.md
docs/GIT_WORKFLOW.md
docs/HISTORY.md
docs/KNOWN_LIMITATIONS.md
docs/MCP_FEATURES.md
docs/MIGRATION_GUIDE_v0.1.0-alpha.2.md
docs/MODULE_STRUCTURE.md
docs/PERFORMANCE_REALITY_CHECK.md
docs/PERSISTENCE_REALITY_CHECK.md
docs/POST_MORTEM_118MB_MINIMAL_SERVER.md
docs/PRODUCTION_DEPLOYMENT_DECISION.md
docs/QUICKSTART.md
docs/RELEASE_CHECKLIST.md
docs/TRANSPORT_REALITY.md
docs/WEEK3_TRANSPORT_SUMMARY.md
docs/configuration.md
docs/index.md
docs/api/README.md
docs/api/index.md
docs/api/tools/add_edges.md
docs/api/tools/add_nodes.md
docs/api/tools/advanced_community_detection.md
docs/api/tools/batch_graph_analysis.md
docs/api/tools/bipartite_analysis.md
docs/api/tools/calculate_centrality.md
docs/api/tools/clear_graph.md
docs/api/tools/clustering_analysis.md
docs/api/tools/community_detection.md
docs/api/tools/connected_components.md
docs/api/tools/create_analysis_workflow.md
docs/api/tools/create_dashboard.md
docs/api/tools/create_graph.md
docs/api/tools/cycle_detection.md
docs/api/tools/delete_graph.md
docs/api/tools/directed_graph_analysis.md
docs/api/tools/export_graph.md
docs/api/tools/find_all_paths.md
docs/api/tools/flow_paths.md
docs/api/tools/generate_graph.md
docs/api/tools/generate_report.md
docs/api/tools/get_graph_info.md
docs/api/tools/graph-operations.md
docs/api/tools/graph_metrics.md
docs/api/tools/graph_statistics.md
docs/api/tools/import_from_source.md
docs/api/tools/import_graph.md
docs/api/tools/list_graphs.md
docs/api/tools/ml_graph_analysis.md
docs/api/tools/monitoring_stats.md
docs/api/tools/network_flow_analysis.md
docs/api/tools/path_analysis.md
docs/api/tools/robustness_analysis.md
docs/api/tools/setup_monitoring.md
docs/api/tools/shortest_path.md
docs/api/tools/specialized_algorithms.md
docs/api/tools/subgraph_extraction.md
docs/api/tools/visualize_3d.md
docs/api/tools/visualize_graph.md
docs/api/tools/visualize_graph_simple.md
docs/archive/phase_1_2_history/BRUTAL_COMPARISON.md
docs/archive/phase_1_2_history/BRUTAL_REALITY_IMPROVEMENT_PLAN.md
docs/archive/phase_1_2_history/DEEP_REALITY_AUDIT.md
docs/archive/phase_1_2_history/PHASE_2_1_SUMMARY.md
docs/archive/phase_1_2_history/PHASE_2_BRUTAL_REALITY_PLAN.md
docs/archive/phase_1_2_history/PHASE_3_BRUTAL_HONESTY.md
docs/archive/phase_1_2_history/PHASE_3_USER_RESEARCH_REPORT.md
docs/archive/phase_1_2_history/README_PHASE2.md
docs/deployment/README.md
docs/development/code-quality.md
docs/development/setup.md
docs/operations/runbook.md
docs/production/access_procedures.md
docs/production/honest_access_guide.md
docs/production/post_deployment_checklist.md
docs/production/realistic_deployment_checklist.md
src/networkx_mcp/__init__.py
src/networkx_mcp/__main__.py
src/networkx_mcp/__version__.py
src/networkx_mcp/cli.py
src/networkx_mcp/errors.py
src/networkx_mcp/features.py
src/networkx_mcp/server.py
src/networkx_mcp/server_fastmcp.py
src/networkx_mcp/server_legacy.py
src/networkx_mcp/server_minimal.py
src/networkx_mcp/config/production.py
src/networkx_mcp/core/__init__.py
src/networkx_mcp/core/algorithms.py
src/networkx_mcp/core/base.py
src/networkx_mcp/core/config.py
src/networkx_mcp/core/container.py
src/networkx_mcp/core/edge_ops.py
src/networkx_mcp/core/graceful_shutdown.py
src/networkx_mcp/core/graph_operations.py
src/networkx_mcp/core/io_handlers.py
src/networkx_mcp/core/node_ops.py
src/networkx_mcp/core/service_config.py
src/networkx_mcp/core/storage_manager.py
src/networkx_mcp/core/thread_safe_graph_manager.py
src/networkx_mcp/core/io/__init__.py
src/networkx_mcp/core/io/base_handler.py
src/networkx_mcp/core/io/csv_handler.py
src/networkx_mcp/core/io/excel_handler.py
src/networkx_mcp/core/io/gml_handler.py
src/networkx_mcp/core/io/graphml_handler.py
src/networkx_mcp/core/io/json_handler.py
src/networkx_mcp/enterprise/__init__.py
src/networkx_mcp/enterprise/auth.py
src/networkx_mcp/enterprise/config.py
src/networkx_mcp/enterprise/monitoring.py
src/networkx_mcp/enterprise/rate_limiting.py
src/networkx_mcp/enterprise/server.py
src/networkx_mcp/handlers/__init__.py
src/networkx_mcp/handlers/algorithms.py
src/networkx_mcp/handlers/graph_ops.py
src/networkx_mcp/io/__init__.py
src/networkx_mcp/io/base.py
src/networkx_mcp/io/graphml.py
src/networkx_mcp/schemas/__init__.py
src/networkx_mcp/schemas/graph_schemas.py
src/networkx_mcp/security/__init__.py
src/networkx_mcp/security/audit.py
src/networkx_mcp/security/auth.py
src/networkx_mcp/security/file_security.py
src/networkx_mcp/security/input_validation.py
src/networkx_mcp/security/middleware.py
src/networkx_mcp/security/rate_limiting.py
src/networkx_mcp/security/resource_limits.py
src/networkx_mcp/security/validation.py
src/networkx_mcp/security/validator.py
src/networkx_mcp/security_fortress/__init__.py
src/networkx_mcp/security_fortress/fortress_server.py
src/networkx_mcp/security_fortress/monitoring.py
src/networkx_mcp/security_fortress/sandboxing.py
src/networkx_mcp/security_fortress/security_broker.py
src/networkx_mcp/security_fortress/threat_detection.py
src/networkx_mcp/security_fortress/validation.py
src/networkx_mcp/storage/__init__.py
src/networkx_mcp/storage/base.py
src/networkx_mcp/storage/factory.py
src/networkx_mcp/storage/memory_backend.py
src/networkx_mcp/storage/redis_backend.py
src/networkx_mcp/utils/__init__.py
src/networkx_mcp/utils/error_handler.py
src/networkx_mcp/utils/formatters.py
src/networkx_mcp/utils/monitoring.py
src/networkx_mcp/utils/performance.py
src/networkx_mcp/utils/validators.py
src/networkx_mcp/validators/__init__.py
src/networkx_mcp/validators/algorithm_validator.py
src/networkx_mcp/validators/graph_validator.py
src/networkx_mcp/visualization/__init__.py
src/networkx_mcp/visualization/base.py
src/networkx_mcp/visualization/matplotlib_visualizer.py
src/networkx_mcp/visualization/plotly_visualizer.py
src/networkx_mcp/visualization/pyvis_visualizer.py
src/networkx_mcp/visualization/specialized_viz.py
src/networkx_mcp_server.egg-info/PKG-INFO
src/networkx_mcp_server.egg-info/SOURCES.txt
src/networkx_mcp_server.egg-info/dependency_links.txt
src/networkx_mcp_server.egg-info/entry_points.txt
src/networkx_mcp_server.egg-info/requires.txt
src/networkx_mcp_server.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/factories.py
tests/test_actual_tools.py
tests/test_brutally_honest_tools.py
tests/test_core_algorithms_audit.py
tests/test_core_operations.py
tests/test_feature_audit.py
tests/test_mcp_protocol.py
tests/test_memory_fixed.py
tests/test_security_fortress.py
tests/test_server_runs.py
tests/test_stdio_robustness.py
tests/test_stress_limits.py
tests/coverage/conftest.py
tests/coverage/test_comprehensive_coverage.py
tests/e2e/test_e2e_workflow.py
tests/e2e/test_mcp_workflows.py
tests/enterprise/__init__.py
tests/enterprise/test_auth.py
tests/enterprise/test_enterprise_server.py
tests/enterprise/test_monitoring.py
tests/enterprise/test_rate_limiting.py
tests/fixtures/__init__.py
tests/fixtures/utils.py
tests/integration/__init__.py
tests/integration/run_integration_tests.py
tests/integration/test_all_transports.py
tests/integration/test_mcp_clients.py
tests/integration/test_mcp_features.py
tests/integration/test_mcp_protocol_compliance.py
tests/integration/test_mcp_tools.py
tests/integration/test_modular_server.py
tests/integration/test_server_startup.py
tests/integration/test_stdio_server.py
tests/integration/redis/test_real_redis_persistence.py
tests/integration/redis/test_redis_persistence.py
tests/integration/redis/test_redis_reality.py
tests/mcp_client/test_real_mcp_clients.py
tests/production/honest_validation.py
tests/production/validate_deployment.py
tests/property/__init__.py
tests/property/test_property_based.py
tests/security/__init__.py
tests/security/test_dos_prevention_demo.py
tests/security/test_input_validation.py
tests/security/test_input_validation_comprehensive.py
tests/security/test_malicious_demo.py
tests/security/test_resource_limits.py
tests/security/test_security_boundaries.py
tests/unit/__init__.py
tests/unit/test_algorithms.py
tests/unit/test_basic.py
tests/unit/test_core_operations.py
tests/unit/test_error_handling.py
tests/unit/test_graph_operations.py
tests/unit/test_handlers_comprehensive.py
tests/unit/test_io_handlers.py
tests/unit/test_mcp_error_handling.py
tests/unit/test_minimal_coverage.py
tests/unit/test_security_validation.py
tests/unit/test_server_minimal.py
tests/unit/test_simple.py
tests/unit/test_visualization.py
tests/working/conftest.py
tests/working/test_basic_operations.py
tests/working/test_new_operations.py