LICENSE
README.md
pyproject.toml
src/apx_fractal_task_collection/__FRACTAL_MANIFEST__.json
src/apx_fractal_task_collection/__init__.py
src/apx_fractal_task_collection/init_utils.py
src/apx_fractal_task_collection/io_models.py
src/apx_fractal_task_collection/utils.py
src/apx_fractal_task_collection.egg-info/PKG-INFO
src/apx_fractal_task_collection.egg-info/SOURCES.txt
src/apx_fractal_task_collection.egg-info/dependency_links.txt
src/apx_fractal_task_collection.egg-info/requires.txt
src/apx_fractal_task_collection.egg-info/top_level.txt
src/apx_fractal_task_collection/dev/__init__.py
src/apx_fractal_task_collection/dev/task_list.py
src/apx_fractal_task_collection/dev/update_manifest.py
src/apx_fractal_task_collection/features/__init__.py
src/apx_fractal_task_collection/features/intensity.py
src/apx_fractal_task_collection/features/morphology.py
src/apx_fractal_task_collection/features/population.py
src/apx_fractal_task_collection/features/texture.py
src/apx_fractal_task_collection/tasks/__init__.py
src/apx_fractal_task_collection/tasks/aggregate_feature_tables.py
src/apx_fractal_task_collection/tasks/apply_basicpy_illumination_models.py
src/apx_fractal_task_collection/tasks/ashlar_stitching_and_registration.py
src/apx_fractal_task_collection/tasks/ashlar_stitching_and_registration_alt.py
src/apx_fractal_task_collection/tasks/calculate_basicpy_illumination_models.py
src/apx_fractal_task_collection/tasks/calculate_pixel_intensity_correlation.py
src/apx_fractal_task_collection/tasks/calculate_registration_image_based_chi_squared_shift.py
src/apx_fractal_task_collection/tasks/clip_label_image.py
src/apx_fractal_task_collection/tasks/compress_zarr_for_visualization.py
src/apx_fractal_task_collection/tasks/convert_IC6000_to_ome_zarr.py
src/apx_fractal_task_collection/tasks/convert_channel_to_label.py
src/apx_fractal_task_collection/tasks/correct_4i_bleaching_artifacts.py
src/apx_fractal_task_collection/tasks/correct_chromatic_shift.py
src/apx_fractal_task_collection/tasks/create_ome_zarr_multiplex_IC6000.py
src/apx_fractal_task_collection/tasks/detect_blob_centroids.py
src/apx_fractal_task_collection/tasks/expand_labels_skimage.py
src/apx_fractal_task_collection/tasks/filter_label_by_size.py
src/apx_fractal_task_collection/tasks/init_add_multiplexing_cycle_IC6000.py
src/apx_fractal_task_collection/tasks/init_aggregate_feature_tables.py
src/apx_fractal_task_collection/tasks/init_ashlar_stitching_and_registration.py
src/apx_fractal_task_collection/tasks/init_calculate_basicpy_illumination_models.py
src/apx_fractal_task_collection/tasks/init_calculate_pixel_intensity_correlation.py
src/apx_fractal_task_collection/tasks/init_clip_label_image.py
src/apx_fractal_task_collection/tasks/init_compress_zarr_for_visualization.py
src/apx_fractal_task_collection/tasks/init_convert_IC6000_to_ome_zarr.py
src/apx_fractal_task_collection/tasks/init_convert_channel_to_label.py
src/apx_fractal_task_collection/tasks/init_correct_4i_bleaching_artifacts.py
src/apx_fractal_task_collection/tasks/init_correct_chromatic_shift.py
src/apx_fractal_task_collection/tasks/init_detect_blob_centroids.py
src/apx_fractal_task_collection/tasks/init_expand_labels.py
src/apx_fractal_task_collection/tasks/init_filter_label_by_size.py
src/apx_fractal_task_collection/tasks/init_label_assignment_by_overlap.py
src/apx_fractal_task_collection/tasks/init_mask_label_image.py
src/apx_fractal_task_collection/tasks/init_normalize_feature_table.py
src/apx_fractal_task_collection/tasks/init_segment_secondary_objects.py
src/apx_fractal_task_collection/tasks/label_assignment_by_overlap.py
src/apx_fractal_task_collection/tasks/mask_label_image.py
src/apx_fractal_task_collection/tasks/measure_features.py
src/apx_fractal_task_collection/tasks/merge_plate_metadata.py
src/apx_fractal_task_collection/tasks/multiplexed_pixel_clustering.py
src/apx_fractal_task_collection/tasks/normalize_feature_table.py
src/apx_fractal_task_collection/tasks/segment_secondary_objects.py
src/apx_fractal_task_collection/tasks/stitch_fovs_with_overlap.py
tests/test_tasks.py
tests/test_valid_manifest.py