scipy<2,>=1.7
numpy>=1.21
matplotlib<4,>=3.5
scikit-learn==1.4.2
xarray==2024.9.0
optuna<5,>=3.4.0
pandas>=2.1.0
sparse>=0.15.4
numba<1,>=0.60.0
netCDF4<2,>=1.7.1.post2
pyfaidx
tqdm
click
tabulate
luigi>=3.3.0
pydantic>=2.0.0
pyyaml>=6.0.0
colorlog>=6.0.0

[docs]
sphinx
sphinx-autodoc-typehints>=2.0
sphinx-rtd-theme
nbsphinx
ipykernel
numpydoc
furo

[testing]
pytest
pytest-cov
flake8
mypy
black
