README.md
pyproject.toml
plasmidkit/__init__.py
plasmidkit/api.py
plasmidkit/cli.py
plasmidkit/exporters.py
plasmidkit.egg-info/PKG-INFO
plasmidkit.egg-info/SOURCES.txt
plasmidkit.egg-info/dependency_links.txt
plasmidkit.egg-info/entry_points.txt
plasmidkit.egg-info/requires.txt
plasmidkit.egg-info/top_level.txt
plasmidkit/annotate/__init__.py
plasmidkit/annotate/loader.py
plasmidkit/annotate/types.py
plasmidkit/annotate/detectors/__init__.py
plasmidkit/annotate/detectors/gc_length.py
plasmidkit/annotate/detectors/homopolymers.py
plasmidkit/annotate/detectors/marker.py
plasmidkit/annotate/detectors/orf_prodigal.py
plasmidkit/annotate/detectors/ori.py
plasmidkit/annotate/detectors/promoter.py
plasmidkit/annotate/detectors/repeats.py
plasmidkit/annotate/detectors/terminator.py
plasmidkit/annotate/detectors/utils.py
plasmidkit/cache/manager.py
plasmidkit/cache/registry.py
plasmidkit/data/__init__.py
plasmidkit/data/engineered_core_signatures.json
plasmidkit/scoring/calculator.py
plasmidkit/scoring/rules.py
tests/test_api.py