--extra-index-url https://download.pytorch.org/whl/cu118
anndata==0.10.9
annotated-types==0.7.0
array_api_compat==1.11.2
asttokens==3.0.0
certifi==2025.6.15
charset-normalizer==2.1.1
click==8.1.8
cmake==3.25.0
comm==0.2.2
contourpy==1.3.0
cycler==0.12.1
debugpy==1.8.11
decorator==5.2.1
Deprecated==1.2.18
entrypoints==0.4
eval_type_backport==0.2.2
exceptiongroup==1.3.0
executing==2.2.0
filelock==3.13.1
fonttools==4.58.4
get-annotations==0.1.2
gitdb==4.0.12
GitPython==3.1.44
h5py==3.14.0
idna==3.4
igraph==0.11.9
importlib_resources==6.5.2
ipykernel==6.29.5
ipython==8.18.1
jedi==0.19.2
Jinja2==3.1.4
joblib==1.5.1
jupyter-client==7.3.4
jupyter_core==5.8.1
kiwisolver==1.4.7
legacy-api-wrap==1.4.1
leidenalg==0.10.2
lit==15.0.7
llvmlite==0.43.0
MarkupSafe==2.1.5
matplotlib==3.9.4
matplotlib-inline==0.1.7
mpmath==1.3.0
natsort==8.4.0
nest_asyncio==1.6.0
networkx==3.2.1
numba==0.60.0
numpy==1.26.3
packaging==25.0
pandas==2.3.0
parso==0.8.4
patsy==1.0.1
pexpect==4.9.0
pickleshare==0.7.5
pillow==11.0.0
platformdirs==4.3.8
prompt_toolkit==3.0.51
protobuf==6.31.1
psutil==7.0.0
ptyprocess==0.7.0
pure_eval==0.2.3
pydantic==2.11.7
pydantic_core==2.33.2
pydot==4.0.1
Pygments==2.19.1
pynndescent==0.5.13
pyparsing==3.2.3
python-dateutil==2.9.0.post0
pytz==2025.2
PyYAML==6.0.2
pyzmq==26.2.0
requests==2.28.1
scanpy==1.10.3
scib==1.1.7
scikit-learn==1.6.1
scikit-misc==0.3.1
scipy==1.13.1
seaborn==0.13.2
sentry-sdk==2.30.0
session_info==1.0.1
setproctitle==1.3.6
setuptools==78.1.1
six==1.17.0
smmap==5.0.2
stack_data==0.6.3
statsmodels==0.14.4
stdlib-list==0.11.1
sympy==1.13.3
texttable==1.7.0
threadpoolctl==3.6.0
torch==2.0.0+cu118
torchaudio==2.0.1+cu118
torchvision==0.15.1+cu118
tornado==6.1
tqdm==4.67.1
traitlets==5.14.3
triton==2.0.0
typing_extensions==4.12.2
typing-inspection==0.4.1
tzdata==2025.2
umap-learn==0.5.7
urllib3==1.26.13
wcwidth==0.2.13
wheel==0.45.1
wrapt==1.17.2
zipp==3.23.0
