CONTRIBUTING.md
HISTORY.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
docs/Makefile
docs/installation.md
docs/usage.md
docs/_static/images/cell_analysis.png
docs/_static/images/gene_analysis.png
docs/_static/images/logo.png
docs/_static/images/overview.png
docs/_static/images/spatial_deg.png
docs/images/logo.png
docs/test/output_13_0.png
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docs/test/tutorials.md
docs/tutorials/cell_analysis/.ipynb_checkpoints/index_raw-checkpoint.md
docs/tutorials/cell_analysis/.ipynb_checkpoints/previous_index-checkpoint.md
docs/tutorials/gene_analysis/.ipynb_checkpoints/ex-checkpoint.md
src/scomv/__init__.py
src/scomv/__main__.py
src/scomv/cell.py
src/scomv/cell_pipeline.py
src/scomv/cli.py
src/scomv/dendrogram.py
src/scomv/gene.py
src/scomv/gene_pipeline.py
src/scomv/gene_view_tool.py
src/scomv/nmf.py
src/scomv/plot_3d.py
src/scomv/scomv.py
src/scomv/spatial_deg.py
src/scomv.egg-info/PKG-INFO
src/scomv.egg-info/SOURCES.txt
src/scomv.egg-info/dependency_links.txt
src/scomv.egg-info/entry_points.txt
src/scomv.egg-info/requires.txt
src/scomv.egg-info/top_level.txt
src/scomv/preparation/choose_roi.py
src/scomv/preparation/scomv_calc_vector.py
src/scomv/preparation/skny_calc_distance.py
tests/__init__.py
tests/test_scomv.py