LICENSE
LICENSE.txt
README.md
setup.py
rnapy/__init__.py
rnapy/toolkit.py
rnapy.egg-info/PKG-INFO
rnapy.egg-info/SOURCES.txt
rnapy.egg-info/dependency_links.txt
rnapy.egg-info/requires.txt
rnapy.egg-info/top_level.txt
rnapy/core/__init__.py
rnapy/core/base.py
rnapy/core/config.py
rnapy/core/config_loader.py
rnapy/core/exceptions.py
rnapy/core/factory.py
rnapy/data/__init__.py
rnapy/interfaces/__init__.py
rnapy/interfaces/inverse_folding.py
rnapy/interfaces/msa_analysis.py
rnapy/interfaces/sequence_analysis.py
rnapy/interfaces/structure_prediction.py
rnapy/providers/__init__.py
rnapy/providers/RiboDiffusion/__init__.py
rnapy/providers/RiboDiffusion/adapter.py
rnapy/providers/RiboDiffusion/config.py
rnapy/providers/RiboDiffusion/run_lib.py
rnapy/providers/RiboDiffusion/sampling.py
rnapy/providers/RiboDiffusion/utils.py
rnapy/providers/RiboDiffusion/diffusion/__init__.py
rnapy/providers/RiboDiffusion/diffusion/noise_schedule.py
rnapy/providers/RiboDiffusion/models/GVP_diff.py
rnapy/providers/RiboDiffusion/models/__init__.py
rnapy/providers/RiboDiffusion/models/ema.py
rnapy/providers/RiboDiffusion/models/esm_block.py
rnapy/providers/RiboDiffusion/models/esm_utils.py
rnapy/providers/RiboDiffusion/models/transformer_layer.py
rnapy/providers/RiboDiffusion/models/utils.py
rnapy/providers/rhodesign/RhoDesign.py
rnapy/providers/rhodesign/RhoDesign_without2d.py
rnapy/providers/rhodesign/__init__.py
rnapy/providers/rhodesign/adapter.py
rnapy/providers/rhodesign/alphabet.py
rnapy/providers/rhodesign/config.py
rnapy/providers/rhodesign/gvp_transformer_encoder.py
rnapy/providers/rhodesign/gvp_transformer_encoder_without2d.py
rnapy/providers/rhodesign/util.py
rnapy/providers/rhodesign/gvp_src/__init__.py
rnapy/providers/rhodesign/gvp_src/features.py
rnapy/providers/rhodesign/gvp_src/gvp_encoder.py
rnapy/providers/rhodesign/gvp_src/gvp_modules.py
rnapy/providers/rhodesign/transformer_src/__init__.py
rnapy/providers/rhodesign/transformer_src/multihead_attention.py
rnapy/providers/rhodesign/transformer_src/transformer_decoder.py
rnapy/providers/rhodesign/transformer_src/transformer_layer.py
rnapy/providers/rhofold/__init__.py
rnapy/providers/rhofold/adapter.py
rnapy/providers/rhofold/config.py
rnapy/providers/rhofold/predictor.py
rnapy/providers/rhofold/rhofold.py
rnapy/providers/rhofold/model/__init__.py
rnapy/providers/rhofold/model/e2eformer.py
rnapy/providers/rhofold/model/embedders.py
rnapy/providers/rhofold/model/heads.py
rnapy/providers/rhofold/model/msa.py
rnapy/providers/rhofold/model/outer_product_mean.py
rnapy/providers/rhofold/model/pair.py
rnapy/providers/rhofold/model/primitives.py
rnapy/providers/rhofold/model/structure_module.py
rnapy/providers/rhofold/model/triangular_attention.py
rnapy/providers/rhofold/model/triangular_update.py
rnapy/providers/rhofold/relax/__init__.py
rnapy/providers/rhofold/relax/relax.py
rnapy/providers/rhofold/utils/__init__.py
rnapy/providers/rhofold/utils/alphabet.py
rnapy/providers/rhofold/utils/chunk_utils.py
rnapy/providers/rhofold/utils/constants.py
rnapy/providers/rhofold/utils/converter.py
rnapy/providers/rhofold/utils/rigid_utils.py
rnapy/providers/rhofold/utils/ss_utils.py
rnapy/providers/rhofold/utils/tensor_utils.py
rnapy/providers/rna_fm/__init__.py
rnapy/providers/rna_fm/adapter.py
rnapy/providers/rna_fm/axial_attention.py
rnapy/providers/rna_fm/config.py
rnapy/providers/rna_fm/constants.py
rnapy/providers/rna_fm/data.py
rnapy/providers/rna_fm/model.py
rnapy/providers/rna_fm/modules.py
rnapy/providers/rna_fm/multihead_attention.py
rnapy/providers/rna_fm/predictor.py
rnapy/providers/rna_fm/pretrained.py
rnapy/providers/rna_fm/version.py
rnapy/providers/rna_fm/model/__init__.py
rnapy/providers/rna_fm/model/esm1.py
rnapy/providers/rna_msm/__init__.py
rnapy/providers/rna_msm/adapter.py
rnapy/providers/rna_msm/config.py
rnapy/providers/rna_msm/dataset.py
rnapy/providers/rna_msm/lr_schedulers.py
rnapy/providers/rna_msm/model.py
rnapy/providers/rna_msm/modules.py
rnapy/providers/rna_msm/predictor.py
rnapy/providers/rna_msm/product_key_memory.py
rnapy/providers/rna_msm/msm/__init__.py
rnapy/providers/rna_msm/msm/axial_attention.py
rnapy/providers/rna_msm/msm/constants.py
rnapy/providers/rna_msm/msm/data.py
rnapy/providers/rna_msm/msm/model.py
rnapy/providers/rna_msm/msm/modules.py
rnapy/providers/rna_msm/msm/multihead_attention.py
rnapy/providers/rna_msm/utils/__init__.py
rnapy/providers/rna_msm/utils/align.py
rnapy/providers/rna_msm/utils/dataset.py
rnapy/providers/rna_msm/utils/distribute.py
rnapy/providers/rna_msm/utils/ffindex.py
rnapy/providers/rna_msm/utils/likelihood.py
rnapy/providers/rna_msm/utils/metrics.py
rnapy/providers/rna_msm/utils/parsing.py
rnapy/providers/rna_msm/utils/sequence.py
rnapy/providers/rna_msm/utils/structure.py
rnapy/providers/rna_msm/utils/tensor.py
rnapy/providers/rna_msm/utils/tokenization.py
rnapy/providers/rna_msm/utils/typed.py
rnapy/utils/__init__.py
rnapy/utils/config_utils.py
rnapy/utils/data_utils.py
rnapy/utils/file_utils.py