VirtualMicrobes.cython_gsl_interface package¶
Submodules¶
VirtualMicrobes.cython_gsl_interface.integrate module¶
Created on Nov 4, 2013
@author: thocu
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class
VirtualMicrobes.cython_gsl_interface.integrate.
Integrator
¶ Bases:
object
This will wrap the integrator from (cython)gsl, by initializing a stepper with the ‘master’-equation
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run_system
()¶
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sys_c
¶
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class
VirtualMicrobes.cython_gsl_interface.integrate.
SpatialIntegrator
¶ Bases:
object
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diffusion_step
()¶
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gp_to_integrators_c_dict
¶
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grid
¶
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print_spatial_sys_vars
()¶ print out all variable values
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run_spatial_system
()¶
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store_nr_time_points_py
()¶
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update_diffusion_stepping
()¶
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update_drivers
()¶
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update_integrators
()¶
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VirtualMicrobes.cython_gsl_interface.odes module¶
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class
VirtualMicrobes.cython_gsl_interface.odes.
CELL
¶ Bases:
object
CELL is a parallel structure to the python class Cell that is tasked with generating the set of equations to be solved by integration procedure
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enzymes_c
¶
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pumps_c
¶
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py_cell
¶
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small_mols_c
¶
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tfs_c
¶
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class
VirtualMicrobes.cython_gsl_interface.odes.
REG_SEQ
¶ Bases:
object