README¶
Virtual Microbes Evolutionary Simulator
Features¶
- Individual based model of evolving microbes.
- Explicit model of evolving genome.
- Spatially extended environment.
- Microbes evolve metabolic capacities to exploit environmental nutrients.
Dependencies and scripts¶
- depends on:
- cython
- matplotlib
- networkx (network analysis and drawing)
- ete3 (tree drawing and phylogenetics)
- others see requirements.txt
- to run:
- basic:
python vermicelli.py evo
- basic: