{"version":2,"width":109,"height":24,"title":"sci-rag-new (generated by scripts/render_cast.py)","env":{"TERM":"xterm-256color","SHELL":"/bin/bash"}}
[0.12,"o","$ pipx install sci-rag-kit\r\n"]
[0.24,"o","$ sci-rag-new\r\n"]
[0.36,"o","project_name (My Scientific KB): Membrane Materials KB\r\n"]
[0.81,"o","repo_name (membrane-materials-kb):\r\n"]
[0.93,"o","description (A short description of your domain.): Membrane chemistry and performance for water treatment\r\n"]
[1.05,"o","author_name (Your name, lab, or organization): Berkeley Lab\r\n"]
[1.17,"o","contact_email (Sent to OpenAlex, Crossref, and Unpaywall): you@lbl.gov\r\n"]
[1.62,"o","python_version (3.12):\r\n"]
[1.74,"o","Select environment_manager\r\n"]
[1.86,"o","1 - uv\r\n"]
[1.98,"o","2 - pixi\r\n"]
[2.1,"o","3 - conda\r\n"]
[2.22,"o","4 - venv+pip\r\n"]
[2.34,"o","Choose from [1/2/3/4] (1): 2\r\n"]
[2.46,"o","Select dependency_file\r\n"]
[2.58,"o","1 - pyproject.toml\r\n"]
[2.7,"o","2 - pixi.toml\r\n"]
[3.15,"o","Choose from [1/2] (1):\r\n"]
[3.27,"o","Select credentials\r\n"]
[3.39,"o","1 - google_ai_studio\r\n"]
[3.51,"o","2 - vertex_ai\r\n"]
[3.63,"o","3 - offline\r\n"]
[3.75,"o","Choose from [1/2/3] (1): 1\r\n"]
[3.87,"o","Select embedding_provider\r\n"]
[3.99,"o","1 - google\r\n"]
[4.11,"o","2 - local-hash\r\n"]
[4.56,"o","Choose from [1/2] (1):\r\n"]
[5.01,"o","llm_model (gemini-2.5-flash):\r\n"]
[5.46,"o","embedding_model (gemini-embedding-001):\r\n"]
[5.91,"o","embedding_dim (1536):\r\n"]
[6.03,"o","Select ontology\r\n"]
[6.15,"o","1 - draft_with_llm\r\n"]
[6.27,"o","2 - keep_demo_example\r\n"]
[6.39,"o","3 - blank\r\n"]
[6.51,"o","Choose from [1/2/3] (1): 1\r\n"]
[6.63,"o","Select corpus_source\r\n"]
[6.75,"o","1 - local_files\r\n"]
[6.87,"o","2 - openalex_topic\r\n"]
[6.99,"o","3 - doi_list\r\n"]
[7.11,"o","4 - demo_only\r\n"]
[7.23,"o","Choose from [1/2/3/4] (1): 2\r\n"]
[7.35,"o","openalex_topic (your topic): polyamide membrane fouling\r\n"]
[7.47,"o","max_results (100): 250\r\n"]
[7.59,"o","Select pdf_parser\r\n"]
[7.71,"o","1 - pypdf\r\n"]
[7.83,"o","2 - docling\r\n"]
[7.95,"o","Choose from [1/2] (1): 2\r\n"]
[8.07,"o","Select reranker\r\n"]
[8.19,"o","1 - none\r\n"]
[8.31,"o","2 - llm\r\n"]
[8.43,"o","3 - local_cross_encoder\r\n"]
[8.88,"o","Choose from [1/2/3] (1):\r\n"]
[9.0,"o","Select include_terraform\r\n"]
[9.12,"o","1 - Yes\r\n"]
[9.24,"o","2 - No\r\n"]
[9.36,"o","Choose from [1/2] (1): 2\r\n"]
[9.48,"o","Select include_demo_corpus\r\n"]
[9.6,"o","1 - Yes\r\n"]
[9.72,"o","2 - No\r\n"]
[9.84,"o","Choose from [1/2] (1): 2\r\n"]
[9.96,"o","Select open_source_license\r\n"]
[10.08,"o","1 - BSD-3-Clause\r\n"]
[10.2,"o","2 - MIT\r\n"]
[10.32,"o","3 - Apache-2.0\r\n"]
[10.44,"o","4 - No license file\r\n"]
[10.89,"o","Choose from [1/2/3/4] (1):\r\n"]
[11.01,"o","Select initialize_git\r\n"]
[11.13,"o","1 - Yes\r\n"]
[11.25,"o","2 - No\r\n"]
[11.7,"o","Choose from [1/2] (1):\r\n"]
[11.82,"o","\r\n"]
[11.94,"o","  Drafting an ontology for \"Membrane chemistry and performance for water treatment\"...\r\n"]
[12.06,"o","\r\n"]
[12.18,"o","  Entity types      Membrane, Material, Contaminant, Process, Property, Application, Organization, Standard\r\n"]
[12.3,"o","  Relation types    MADE_OF, REMOVES, HAS_PROPERTY, USED_IN, REQUIRES, COMPARED_WITH\r\n"]
[12.42,"o","  Query classes     performance, fabrication, fouling, application\r\n"]
[12.54,"o","\r\n"]
[12.99,"o","  Accept this ontology? [y/n/redraft] (y):\r\n"]
[13.11,"o","\r\n"]
[13.23,"o","Fetching sci-rag-kit for membrane-materials-kb...\r\n"]
[13.35,"o","\r\n"]
[13.47,"o","Writing membrane-materials-kb/\r\n"]
[13.59,"o","\r\n"]
[13.71,"o","  removed                docs/planning/, infra/terraform/, data/demo/, examples/\r\n"]
[13.83,"o","  domain/domain.yaml     8 entity types, 6 relation types, 4 query classes\r\n"]
[13.95,"o","  domain/eval_seed_questions.jsonl   guided blank\r\n"]
[14.07,"o","  .env                   google_ai_studio, gemini-2.5-flash, gemini-embedding-001\r\n"]
[14.19,"o","  pyproject.toml         name, description, extras: docling\r\n"]
[14.31,"o","  Makefile               commands prefixed with `pixi run`\r\n"]
[14.43,"o","  docs/                  kit onboarding, player, and cast removed\r\n"]
[14.55,"o","  pyproject.toml         [tool.pixi] workspace, environments, tasks\r\n"]
[14.67,"o","  Dockerfile             pixi base image\r\n"]
[14.79,"o","  .devcontainer/         ghcr.io/prefix-dev/devcontainer-features/pixi:0\r\n"]
[14.91,"o","  rendered               7 files for pixi\r\n"]
[15.03,"o","  pixi.lock              created on first `pixi install`\r\n"]
[15.15,"o","  data/campaigns/        openalex topic \"polyamide membrane fouling\"\r\n"]
[15.27,"o","  LICENSE                BSD-3-Clause\r\n"]
[15.39,"o","  README.md              rewritten opening\r\n"]
[15.51,"o","  git                    initialized, 1 commit\r\n"]
[15.63,"o","\r\n"]
[16.08,"o","Done. Membrane Materials KB is yours. Next:\r\n"]
[16.2,"o","\r\n"]
[16.32,"o","  cd membrane-materials-kb\r\n"]
[16.44,"o","  pixi install\r\n"]
[16.56,"o","  pixi run sci-rag doctor\r\n"]
[16.68,"o","  make corpus\r\n"]
[18.68,"o",""]
