LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
agentype/__init__.py
agentype/api/__init__.py
agentype/api/annotation.py
agentype/api/celltype_analysis.py
agentype/api/data_processing.py
agentype/api/main_workflow.py
agentype/appagent/__init__.py
agentype/appagent/example_usage.py
agentype/appagent/mcp_client_example.py
agentype/appagent/agent/__init__.py
agentype/appagent/agent/celltype_annotation_agent.py
agentype/appagent/api/main.py
agentype/appagent/api/models.py
agentype/appagent/api/routes.py
agentype/appagent/api/service.py
agentype/appagent/clients/__init__.py
agentype/appagent/clients/mcp_client.py
agentype/appagent/config/__init__.py
agentype/appagent/config/cache_config.py
agentype/appagent/config/prompts.py
agentype/appagent/config/settings.py
agentype/appagent/llm/__init__.py
agentype/appagent/locales/en.json
agentype/appagent/locales/zh.json
agentype/appagent/services/__init__.py
agentype/appagent/services/mcp_server.py
agentype/appagent/tools/celldex_download_tool.py
agentype/appagent/tools/celldex_info_tool.py
agentype/appagent/tools/celltypist_simple.py
agentype/appagent/tools/file_validators.py
agentype/appagent/tools/get_celldex_projects_bilingual.py
agentype/appagent/tools/get_celltypist_models.py
agentype/appagent/tools/get_sctype_tissues.py
agentype/appagent/tools/run_sctype_test.py
agentype/appagent/tools/sctype_simple.py
agentype/appagent/tools/singleR_simple.py
agentype/appagent/tools/species_detection.py
agentype/appagent/tools/test_file_format_fallback.py
agentype/appagent/tools/r/__init__.py
agentype/appagent/tools/r/sctype_run.R
agentype/appagent/tools/r/sctype/ScTypeDB_full.xlsx
agentype/appagent/tools/r/sctype/__init__.py
agentype/appagent/tools/r/sctype/auto_detect_tissue_type.R
agentype/appagent/tools/r/sctype/gene_sets_prepare.R
agentype/appagent/tools/r/sctype/sctype_score_.R
agentype/appagent/tools/r/sctype/sctype_wrapper.R
agentype/appagent/utils/__init__.py
agentype/appagent/utils/common.py
agentype/appagent/utils/content_processor.py
agentype/appagent/utils/i18n.py
agentype/appagent/utils/output_logger.py
agentype/appagent/utils/parser.py
agentype/appagent/utils/path_manager copy.py
agentype/appagent/utils/path_manager.py
agentype/appagent/utils/validator.py
agentype/common/__init__.py
agentype/common/base_content_processor.py
agentype/common/base_parser.py
agentype/common/base_validator.py
agentype/common/language_manager.py
agentype/common/llm_client.py
agentype/common/llm_logger.py
agentype/common/log_token_parser.py
agentype/common/mcp_client.py
agentype/common/streaming_filter.py
agentype/common/token_statistics.py
agentype/config/__init__.py
agentype/config/config_manager.py
agentype/config/unified_logger.py
agentype/dataagent/__init__.py
agentype/dataagent/api_usage_example.py
agentype/dataagent/mcp_client_example.py
agentype/dataagent/agent/__init__.py
agentype/dataagent/agent/data_processor_agent.py
agentype/dataagent/api/__init__.py
agentype/dataagent/api/rest_server.py
agentype/dataagent/clients/__init__.py
agentype/dataagent/clients/mcp_client.py
agentype/dataagent/config/__init__.py
agentype/dataagent/config/cache_config.py
agentype/dataagent/config/prompts.py
agentype/dataagent/config/settings.py
agentype/dataagent/llm/__init__.py
agentype/dataagent/locales/en.json
agentype/dataagent/locales/zh.json
agentype/dataagent/services/__init__.py
agentype/dataagent/services/mcp_server.py
agentype/dataagent/tools/data_converters.py
agentype/dataagent/tools/filetool.py
agentype/dataagent/tools/save_marker_genes.py
agentype/dataagent/tools/save_marker_genes_r.R
agentype/dataagent/utils/__init__.py
agentype/dataagent/utils/common.py
agentype/dataagent/utils/content_processor.py
agentype/dataagent/utils/i18n.py
agentype/dataagent/utils/output_logger.py
agentype/dataagent/utils/parser.py
agentype/dataagent/utils/path_manager.py
agentype/dataagent/utils/path_normalizer.py
agentype/dataagent/utils/validator.py
agentype/examples/README.md
agentype/examples/complete_workflow_example.py
agentype/mainagent/__init__.py
agentype/mainagent/main_agent.py
agentype/mainagent/mcp_client_example.py
agentype/mainagent/agent/__init__.py
agentype/mainagent/agent/main_react_agent.py
agentype/mainagent/clients/__init__.py
agentype/mainagent/clients/mcp_client.py
agentype/mainagent/clients/subagent_client.py
agentype/mainagent/config/__init__.py
agentype/mainagent/config/cache_config.py
agentype/mainagent/config/prompts.py
agentype/mainagent/config/session_config.py
agentype/mainagent/config/settings.py
agentype/mainagent/llm/__init__.py
agentype/mainagent/locales/en.json
agentype/mainagent/locales/zh.json
agentype/mainagent/services/__init__.py
agentype/mainagent/services/mcp_server.py
agentype/mainagent/tools/__init__.py
agentype/mainagent/tools/adata_mapping.py
agentype/mainagent/tools/cluster_tools.py
agentype/mainagent/tools/file_paths_tools.py
agentype/mainagent/tools/mapping_tools.py
agentype/mainagent/tools/subagent_tools.py
agentype/mainagent/utils/__init__.py
agentype/mainagent/utils/content_processor.py
agentype/mainagent/utils/i18n.py
agentype/mainagent/utils/output_logger.py
agentype/mainagent/utils/parser.py
agentype/mainagent/utils/path_manager.py
agentype/mainagent/utils/validator.py
agentype/prompts/__init__.py
agentype/prompts/config.py
agentype/prompts/prompt_manager.py
agentype/prompts/en/__init__.py
agentype/prompts/en/appagent_prompts.py
agentype/prompts/en/common_prompts.py
agentype/prompts/en/dataagent_prompts.py
agentype/prompts/en/mainagent_prompts.py
agentype/prompts/en/subagent_prompts.py
agentype/prompts/zh/__init__.py
agentype/prompts/zh/appagent_prompts.py
agentype/prompts/zh/common_prompts.py
agentype/prompts/zh/dataagent_prompts.py
agentype/prompts/zh/mainagent_prompts.py
agentype/prompts/zh/subagent_prompts.py
agentype/subagent/__init__.py
agentype/subagent/analyze_clusters_from_csv.py
agentype/subagent/api_usage_example.py
agentype/subagent/mcp_client_example.py
agentype/subagent/agent/__init__.py
agentype/subagent/agent/celltype_react_agent.py
agentype/subagent/api/main.py
agentype/subagent/api/models.py
agentype/subagent/api/routes.py
agentype/subagent/api/service.py
agentype/subagent/clients/__init__.py
agentype/subagent/clients/mcp_client.py
agentype/subagent/config/__init__.py
agentype/subagent/config/cache_config.py
agentype/subagent/config/prompts.py
agentype/subagent/config/settings.py
agentype/subagent/llm/__init__.py
agentype/subagent/llm/logger.py
agentype/subagent/locales/en.json
agentype/subagent/locales/zh.json
agentype/subagent/services/mcp_server.py
agentype/subagent/services/rest_api_server.py
agentype/subagent/tools/__init__.py
agentype/subagent/tools/analysis/__init__.py
agentype/subagent/tools/analysis/gene_enrichment.py
agentype/subagent/tools/fetchers/__init__.py
agentype/subagent/tools/fetchers/cellmarker_fetcher.py
agentype/subagent/tools/fetchers/panglaodb_fetcher.py
agentype/subagent/tools/ncbi/__init__.py
agentype/subagent/tools/ncbi/gene_info_manager.py
agentype/subagent/tools/ncbi/ncbi_api_adapter.py
agentype/subagent/utils/__init__.py
agentype/subagent/utils/common.py
agentype/subagent/utils/content_processor.py
agentype/subagent/utils/file_utils.py
agentype/subagent/utils/i18n.py
agentype/subagent/utils/output_logger.py
agentype/subagent/utils/parser.py
agentype/subagent/utils/path_manager.py
agentype/subagent/utils/validator.py