LICENSE
README.md
pyproject.toml
pypangraph/__init__.py
pypangraph/class_alignments.py
pypangraph/class_block.py
pypangraph/class_graph.py
pypangraph/class_node.py
pypangraph/class_path.py
pypangraph/indexed_collection.py
pypangraph/minimal_synteny_units.py
pypangraph/pangraph_schema.py
pypangraph/topology_utils.py
pypangraph.egg-info/PKG-INFO
pypangraph.egg-info/SOURCES.txt
pypangraph.egg-info/dependency_links.txt
pypangraph.egg-info/requires.txt
pypangraph.egg-info/top_level.txt
pypangraph/export/__init__.py
pypangraph/export/gfa.py
pypangraph/export/junctions_to_gfa.py
pypangraph/junctions/__init__.py
pypangraph/junctions/backbone.py
pypangraph/junctions/junction.py
pypangraph/junctions/positions.py
pypangraph/junctions/sequences.py
pypangraph/junctions/stats.py
pypangraph/plots/__init__.py
pypangraph/plots/dotplot.py
pypangraph/plots/linear_junction_plot.py
tests/test_alignments.py
tests/test_block.py
tests/test_export.py
tests/test_graph.py
tests/test_junctions_analyses.py
tests/test_junctions_core.py
tests/test_junctions_inversion.py
tests/test_msu.py
tests/test_plots.py