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interfaces.slicer.quantification.changequantification

IntensityDifferenceMetric

Link to code

Wraps command **/home/raid3/gorgolewski/software/slicer/Slicer –launch IntensityDifferenceMetric **

title:
Intensity Difference Change Detection (FAST)
category:
Quantification.ChangeQuantification
description:
Quantifies the changes between two spatially aligned images based on the pixel-wise difference of image intensities.

version: 0.1

contributor: Andrey Fedorov

acknowledgements:

Inputs:

[Mandatory]

[Optional]
args: (a string)
        Additional parameters to the command
baselineSegmentationVolume: (an existing file name)
        Label volume that contains segmentation of the structure of interest in the baseline
        volume.
baselineVolume: (an existing file name)
        Baseline volume to be compared to
changingBandSize: (an integer)
        How far (in mm) from the boundary of the segmentation should the intensity changes be
        considered.
environ: (a dictionary with keys which are a value of type 'str' and with values which
         are a value of type 'str', nipype default value: {})
        Environment variables
followupVolume: (an existing file name)
        Followup volume to be compare to the baseline
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the interface fails to
        run
outputVolume: (a boolean or a file name)
        Output volume to keep the results of change quantification.
reportFileName: (a boolean or a file name)
        Report file name
sensitivityThreshold: (a float)
        This parameter should be between 0 and 1, and defines how sensitive the metric should be
        to the intensity changes.

Outputs:

outputVolume: (an existing file name)
        Output volume to keep the results of change quantification.
reportFileName: (an existing file name)
        Report file name