NIPY logo
Home · Quickstart · Documentation · Citation · NiPy
Loading

Table Of Contents

Versions

ReleaseDevel
0.7.0pre-0.8
Download Github

Links

interfaces.slicer.utilities

EMSegmentTransformToNewFormat

Link to code

Wraps command **/home/raid3/gorgolewski/software/slicer/Slicer –launch EMSegmentTransformToNewFormat **

title:
Transform MRML Files to New EMSegmenter Standard
category:
Utilities
description:
Transform MRML Files to New EMSegmenter Standard

Inputs:

[Mandatory]

[Optional]
args: (a string)
        Additional parameters to the command
environ: (a dictionary with keys which are a value of type 'str' and with values which
         are a value of type 'str', nipype default value: {})
        Environment variables
ignore_exception: (a boolean, nipype default value: False)
        Print an error message instead of throwing an exception in case the interface fails to
        run
inputMRMLFileName: (an existing file name)
        Active MRML scene that contains EMSegment algorithm parameters in the format before
        3.6.3 - please include absolute  file name in path.
outputMRMLFileName: (a boolean or a file name)
        Write out the MRML scene after transformation to format 3.6.3 has been made. - has to be
        in the same directory as the input MRML file due to Slicer Core bug  - please include
        absolute  file name in path
templateFlag: (a boolean)
        Set to true if the transformed mrml file should be used as template file

Outputs:

outputMRMLFileName: (an existing file name)
        Write out the MRML scene after transformation to format 3.6.3 has been made. - has to be
        in the same directory as the input MRML file due to Slicer Core bug  - please include
        absolute  file name in path