LICENSE.txt
README.md
pyproject.toml
src/agricola/__init__.py
src/agricola/api.py
src/agricola/types.py
src/agricola.egg-info/PKG-INFO
src/agricola.egg-info/SOURCES.txt
src/agricola.egg-info/dependency_links.txt
src/agricola.egg-info/entry_points.txt
src/agricola.egg-info/requires.txt
src/agricola.egg-info/top_level.txt
src/agricola/cli/__init__.py
src/agricola/cli/commands.py
src/agricola/cli/data.py
src/agricola/cli/formatting.py
src/agricola/cli/runtime.py
src/agricola/io/__init__.py
src/agricola/io/genotypes.py
src/agricola/io/variants.py
src/agricola/models/__init__.py
src/agricola/models/logistic.py
src/agricola/models/ridge.py
src/agricola/numerical/__init__.py
src/agricola/numerical/linear_algebra.py
src/agricola/pipeline/__init__.py
src/agricola/pipeline/cross_validation.py
src/agricola/pipeline/level0.py
src/agricola/pipeline/level1.py
src/agricola/pipeline/step1.py
src/agricola/pipeline/step2.py
src/agricola/pipeline/writer.py
src/agricola/statistics/__init__.py
src/agricola/statistics/binary.py
src/agricola/statistics/common.py
src/agricola/statistics/quantitative.py
src/agricola/validation/__init__.py
src/agricola/validation/inputs.py
tests/test_cli.py
tests/test_numerical_io.py
tests/test_step1.py
tests/test_step2.py
tests/test_step2_stats.py