Metadata-Version: 2.1
Name: motile_toolbox
Version: 0.4.0
Summary: A toolbox for tracking with (motile)[https://github.com/funkelab/motile].
Author-email: Funke Lab <malinmayorc@janelia.hhmi.org>
License: BSD 3-Clause License
Project-URL: homepage, https://github.com/funkelab/motile_toolbox
Project-URL: repository, https://github.com/funkelab/motile_toolbox
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.10
Description-Content-Type: text/markdown
Requires-Dist: motile
Requires-Dist: networkx
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: scikit-image
Requires-Dist: tqdm
Requires-Dist: zarr
Requires-Dist: plotly
Provides-Extra: dev
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-cov; extra == "dev"
Requires-Dist: mypy; extra == "dev"
Requires-Dist: pdoc; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: types-tqdm; extra == "dev"
Requires-Dist: pytest-unordered; extra == "dev"
Requires-Dist: ruff; extra == "dev"

# motile_toolbox

[![tests](https://github.com/funkelab/motile_toolbox/actions/workflows/tests.yaml/badge.svg)](https://github.com/funkelab/motile_toolbox/actions/workflows/tests.yaml)
[![black](https://github.com/funkelab/motile_toolbox/actions/workflows/black.yaml/badge.svg)](https://github.com/funkelab/motile_toolbox/actions/workflows/black.yaml)
[![mypy](https://github.com/funkelab/motile_toolbox/actions/workflows/mypy.yaml/badge.svg)](https://github.com/funkelab/motile_toolbox/actions/workflows/mypy.yaml)
[![codecov](https://codecov.io/gh/funkelab/motile_toolbox/branch/main/graph/badge.svg)](https://codecov.io/gh/funkelab/motile_toolbox)

A suite of tools for helping to run tracking with [motile](https://funkelab.github.io/motile/). Current functionality includes creating candidate graphs from segmentations and track loading utilities.
API documentation available at: https://funkelab.github.io/motile_toolbox.


## Install Motile Toolbox
Motile Toolbox depends on [motile](https://github.com/funkelab/motile), which in turn depends on gurobi and ilpy. These dependencies must be installed with conda before installing motile toolbox with pip.
```
conda install -c conda-forge -c funkelab -c gurobi ilpy
pip install motile-toolbox
```
