Index

A

alexandria module alexandria.analyzers.ctp401 module alexandria.analyzers.ctp404 module alexandria.analyzers.ctp515 module alexandria.analyzers.detailed_uniformity module alexandria.analyzers.high_contrast module alexandria.analyzers.uniformity module alexandria.plotters.ctp401_plotter module alexandria.plotters.ctp404_plotter module alexandria.plotters.ctp515_plotter module alexandria.plotters.detailed_uniformity_plotter module alexandria.plotters.high_contrast_plotter module alexandria.plotters.uniformity_plotter module alexandria.utils.geometry module alexandria.utils.image_processing module alexandria.wrappers.ctp401_wrapper module alexandria.wrappers.ctp404_wrapper module alexandria.wrappers.ctp515_wrapper module alexandria.wrappers.high_contrast_wrapper module

alexandria.wrappers.uniformity_wrapper module analyze() (alexandria.analyzers.ctp401.CTP401Analyzer method) (alexandria.analyzers.ctp404.CTP404Analyzer method) (alexandria.analyzers.ctp515.CTP515Analyzer method) (alexandria.analyzers.detailed_uniformity.DetailedUniformityAnalyzer method) (alexandria.analyzers.high_contrast.HighContrastAnalyzer method) (alexandria.analyzers.uniformity.UniformityAnalyzer method) (alexandria.CTP401Analyzer method) (alexandria.CTP401ModuleReporter method) (alexandria.CTP404Analyzer method) (alexandria.CTP404ModuleReporter method) (alexandria.CTP515Analyzer method) (alexandria.CTP515ModuleReporter method) (alexandria.DetailedUniformityAnalyzer method) (alexandria.HighContrastAnalyzer method) (alexandria.HighContrastModuleReporter method) (alexandria.UniformityAnalyzer method) (alexandria.UniformityModuleReporter method) (alexandria.wrappers.ctp401_wrapper.CTP401ModuleReporter method) (alexandria.wrappers.ctp404_wrapper.CTP404ModuleReporter method) (alexandria.wrappers.ctp515_wrapper.CTP515ModuleReporter method) (alexandria.wrappers.high_contrast_wrapper.HighContrastModuleReporter method) (alexandria.wrappers.uniformity_wrapper.UniformityModuleReporter method) analyze_and_plot() (alexandria.CTP401ModuleReporter method) (alexandria.CTP404ModuleReporter method) (alexandria.CTP515ModuleReporter method) (alexandria.HighContrastModuleReporter method) (alexandria.UniformityModuleReporter method) (alexandria.wrappers.ctp401_wrapper.CTP401ModuleReporter method) (alexandria.wrappers.ctp404_wrapper.CTP404ModuleReporter method) (alexandria.wrappers.ctp515_wrapper.CTP515ModuleReporter method) (alexandria.wrappers.high_contrast_wrapper.HighContrastModuleReporter method) (alexandria.wrappers.uniformity_wrapper.UniformityModuleReporter method) analyze_uniformity() (alexandria.analyzers.uniformity.UniformityAnalyzer method) (alexandria.UniformityAnalyzer method) angle_offset (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP515Analyzer attribute) apply_gaussian_filter() (alexandria.utils.image_processing.ImageProcessor static method)

C

calculate_slice_thickness() (alexandria.utils.geometry.CatPhanGeometry static method) CatPhanGeometry (class in alexandria.utils.geometry) center (alexandria.analyzers.ctp401.CTP401Analyzer attribute) (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP401Analyzer attribute) (alexandria.CTP515Analyzer attribute) circular_roi_mask() (in module alexandria.utils.geometry) close_plot() (alexandria.CTP401ModuleReporter method) (alexandria.CTP404ModuleReporter method) (alexandria.CTP515ModuleReporter method) (alexandria.HighContrastModuleReporter method) (alexandria.UniformityModuleReporter method) (alexandria.wrappers.ctp401_wrapper.CTP401ModuleReporter method) (alexandria.wrappers.ctp404_wrapper.CTP404ModuleReporter method) (alexandria.wrappers.ctp515_wrapper.CTP515ModuleReporter method) (alexandria.wrappers.high_contrast_wrapper.HighContrastModuleReporter method) (alexandria.wrappers.uniformity_wrapper.UniformityModuleReporter method)

compute_phantom_boundary() (in module alexandria.utils.geometry) CTP401Analyzer (class in alexandria) (class in alexandria.analyzers.ctp401) CTP401ModuleReporter (class in alexandria) (class in alexandria.wrappers.ctp401_wrapper) CTP401Plotter (class in alexandria.plotters.ctp401_plotter) CTP404Analyzer (class in alexandria) (class in alexandria.analyzers.ctp404) CTP404ModuleReporter (class in alexandria) (class in alexandria.wrappers.ctp404_wrapper) CTP404Plotter (class in alexandria.plotters.ctp404_plotter) CTP515Analyzer (class in alexandria) (class in alexandria.analyzers.ctp515) CTP515ModuleReporter (class in alexandria) (class in alexandria.wrappers.ctp515_wrapper) CTP515Plotter (class in alexandria.plotters.ctp515_plotter)

D

DetailedUniformityAnalyzer (class in alexandria) (class in alexandria.analyzers.detailed_uniformity) DetailedUniformityPlotter (class in alexandria.plotters.detailed_uniformity_plotter) detect_rotation() (alexandria.analyzers.ctp401.CTP401Analyzer method) (alexandria.analyzers.ctp404.CTP404Analyzer method) (alexandria.CTP401Analyzer method) (alexandria.CTP401ModuleReporter method) (alexandria.CTP404Analyzer method) (alexandria.wrappers.ctp401_wrapper.CTP401ModuleReporter method)

draw_boundary() (in module alexandria.utils.geometry)

E

estimate_noise() (alexandria.utils.image_processing.ImageProcessor static method)

extract_profile() (alexandria.utils.image_processing.ImageProcessor static method)

F

find_center() (alexandria.utils.geometry.CatPhanGeometry static method) find_center_edge_detection() (in module alexandria.utils.geometry)

find_edges() (alexandria.utils.image_processing.ImageProcessor static method) find_rotation() (in module alexandria.utils.geometry)

G

get_plot_data() (alexandria.analyzers.ctp515.CTP515Analyzer method) (alexandria.CTP515Analyzer method) get_results_summary() (alexandria.analyzers.ctp404.CTP404Analyzer method) (alexandria.analyzers.ctp515.CTP515Analyzer method) (alexandria.CTP404Analyzer method) (alexandria.CTP515Analyzer method) get_summary() (alexandria.CTP401ModuleReporter method) (alexandria.CTP404ModuleReporter method) (alexandria.CTP515ModuleReporter method) (alexandria.HighContrastModuleReporter method) (alexandria.UniformityModuleReporter method) (alexandria.wrappers.ctp401_wrapper.CTP401ModuleReporter method) (alexandria.wrappers.ctp404_wrapper.CTP404ModuleReporter method) (alexandria.wrappers.ctp515_wrapper.CTP515ModuleReporter method) (alexandria.wrappers.high_contrast_wrapper.HighContrastModuleReporter method) (alexandria.wrappers.uniformity_wrapper.UniformityModuleReporter method)

H

HighContrastAnalyzer (class in alexandria) (class in alexandria.analyzers.high_contrast)

HighContrastModuleReporter (class in alexandria) (class in alexandria.wrappers.high_contrast_wrapper) HighContrastPlotter (class in alexandria.plotters.high_contrast_plotter)

I

image (alexandria.analyzers.ctp401.CTP401Analyzer attribute) (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP401Analyzer attribute) (alexandria.CTP515Analyzer attribute)

ImageProcessor (class in alexandria.utils.image_processing)

M

MATERIALS (alexandria.analyzers.ctp404.CTP404Analyzer attribute) (alexandria.CTP404Analyzer attribute) module alexandria alexandria.analyzers.ctp401 alexandria.analyzers.ctp404 alexandria.analyzers.ctp515 alexandria.analyzers.detailed_uniformity alexandria.analyzers.high_contrast alexandria.analyzers.uniformity alexandria.plotters.ctp401_plotter alexandria.plotters.ctp404_plotter alexandria.plotters.ctp515_plotter alexandria.plotters.detailed_uniformity_plotter alexandria.plotters.high_contrast_plotter alexandria.plotters.uniformity_plotter alexandria.utils.geometry alexandria.utils.image_processing alexandria.wrappers.ctp401_wrapper alexandria.wrappers.ctp404_wrapper alexandria.wrappers.ctp515_wrapper alexandria.wrappers.high_contrast_wrapper alexandria.wrappers.uniformity_wrapper

P

pixel_spacing (alexandria.analyzers.ctp401.CTP401Analyzer attribute) (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP401Analyzer attribute) (alexandria.CTP515Analyzer attribute) plot() (alexandria.CTP401ModuleReporter method) (alexandria.CTP404ModuleReporter method) (alexandria.CTP515ModuleReporter method) (alexandria.HighContrastModuleReporter method) (alexandria.plotters.ctp401_plotter.CTP401Plotter method) (alexandria.plotters.ctp404_plotter.CTP404Plotter method) (alexandria.plotters.ctp515_plotter.CTP515Plotter method) (alexandria.plotters.detailed_uniformity_plotter.DetailedUniformityPlotter method) (alexandria.plotters.high_contrast_plotter.HighContrastPlotter method) (alexandria.plotters.uniformity_plotter.UniformityPlotter method) (alexandria.UniformityModuleReporter method) (alexandria.wrappers.ctp401_wrapper.CTP401ModuleReporter method) (alexandria.wrappers.ctp404_wrapper.CTP404ModuleReporter method) (alexandria.wrappers.ctp515_wrapper.CTP515ModuleReporter method) (alexandria.wrappers.high_contrast_wrapper.HighContrastModuleReporter method) (alexandria.wrappers.uniformity_wrapper.UniformityModuleReporter method)

prepare_image() (alexandria.analyzers.ctp515.CTP515Analyzer method) (alexandria.analyzers.detailed_uniformity.DetailedUniformityAnalyzer method) (alexandria.analyzers.high_contrast.HighContrastAnalyzer method) (alexandria.analyzers.uniformity.UniformityAnalyzer method) (alexandria.CTP515Analyzer method) (alexandria.DetailedUniformityAnalyzer method) (alexandria.HighContrastAnalyzer method) (alexandria.UniformityAnalyzer method)

R

REGIONS (alexandria.analyzers.uniformity.UniformityAnalyzer attribute) (alexandria.UniformityAnalyzer attribute) results (alexandria.analyzers.ctp401.CTP401Analyzer attribute) (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP401Analyzer attribute) (alexandria.CTP515Analyzer attribute) ROI_ANGLES (alexandria.analyzers.ctp404.CTP404Analyzer attribute) (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP404Analyzer attribute) (alexandria.CTP515Analyzer attribute)

ROI_CONFIG (alexandria.analyzers.ctp401.CTP401Analyzer attribute) (alexandria.CTP401Analyzer attribute) ROI_DISTANCE_MM (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP515Analyzer attribute) ROI_RADII_MM (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP515Analyzer attribute) ROI_SETTINGS (alexandria.analyzers.ctp515.CTP515Analyzer attribute) (alexandria.CTP515Analyzer attribute)

S

save_plot() (alexandria.CTP401ModuleReporter method) (alexandria.CTP404ModuleReporter method) (alexandria.CTP515ModuleReporter method) (alexandria.HighContrastModuleReporter method) (alexandria.UniformityModuleReporter method) (alexandria.wrappers.ctp401_wrapper.CTP401ModuleReporter method) (alexandria.wrappers.ctp404_wrapper.CTP404ModuleReporter method) (alexandria.wrappers.ctp515_wrapper.CTP515ModuleReporter method) (alexandria.wrappers.high_contrast_wrapper.HighContrastModuleReporter method) (alexandria.wrappers.uniformity_wrapper.UniformityModuleReporter method)

select_optimal_ctp528_slices() (alexandria.utils.geometry.CatPhanGeometry static method)

T

threshold_image() (alexandria.utils.image_processing.ImageProcessor static method) to_dict() (alexandria.analyzers.ctp404.CTP404Analyzer method) (alexandria.analyzers.ctp515.CTP515Analyzer method) (alexandria.analyzers.high_contrast.HighContrastAnalyzer method) (alexandria.CTP404Analyzer method) (alexandria.CTP515Analyzer method) (alexandria.HighContrastAnalyzer method)

U

UniformityAnalyzer (class in alexandria) (class in alexandria.analyzers.uniformity)

UniformityModuleReporter (class in alexandria) (class in alexandria.wrappers.uniformity_wrapper) UniformityPlotter (class in alexandria.plotters.uniformity_plotter)